PKNH_1428400 | trypsin-like serine protease, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1428400OTHER0.9916000.0049610.003439
No Results

  • Fasta :-

    >PKNH_1428400 MRGTYMWILYCRTKHLRIRDSFPFSKLRAEQFADKFVRNYGDIINGVKNELNIMCSFCNM SMGMVHVSLCESAIGSPITPVDGCDCTFEHKPEHRLSHGAHDAPSENDQLEQNTQPEKKG TSKLATYLIIYYVKEYVKYVAHSLLHFCFNLCDTIFRTLFVLPKSYLEFPKQLDYYSSIS DNLLTSFVTIYKIYKQNDSSEFRFKLDQLAFLGSGFIYDKRGYVLTAAHNITNTEGTFVI KNEDNFYVATVAGLHRESDICVMKIISEEQFNHIPLNPSRELLKPGETVITYGQIQNFDK GTCSIGVVNQPRQTFTKFENFSEKEKTCLYPFIQISNPINKGMSGSPLIDKHGNLVGMIQ KKIDNYGLALPVNILKNITTHLQEEGTYKEPFLGIVLREKEQSISAVYKNCKNEELKIQD VLVNSPADVAGITKGDIMLRINNTKIKNICDVHEILNSTSDGYVTVDIIRHGKNKKIKVK M
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1428400.fa Sequence name : PKNH_1428400 Sequence length : 481 VALUES OF COMPUTED PARAMETERS Coef20 : 4.537 CoefTot : -0.132 ChDiff : 4 ZoneTo : 19 KR : 5 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.612 1.329 0.240 0.464 MesoH : -0.443 0.388 -0.344 0.243 MuHd_075 : 20.951 4.896 2.995 4.544 MuHd_095 : 19.835 9.280 4.902 4.253 MuHd_100 : 17.431 9.817 3.974 4.102 MuHd_105 : 17.530 6.891 3.217 3.315 Hmax_075 : 5.133 8.750 -0.190 2.780 Hmax_095 : 9.300 7.500 0.761 3.930 Hmax_100 : 11.700 8.600 0.737 4.090 Hmax_105 : 6.650 7.900 1.272 3.383 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6739 0.3261 DFMC : 0.4310 0.5690 This protein is probably imported in mitochondria. f(Ser) = 0.0000 f(Arg) = 0.2105 CMi = 0.00000 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 481 PKNH_1428400 MRGTYMWILYCRTKHLRIRDSFPFSKLRAEQFADKFVRNYGDIINGVKNELNIMCSFCNMSMGMVHVSLCESAIGSPITP 80 VDGCDCTFEHKPEHRLSHGAHDAPSENDQLEQNTQPEKKGTSKLATYLIIYYVKEYVKYVAHSLLHFCFNLCDTIFRTLF 160 VLPKSYLEFPKQLDYYSSISDNLLTSFVTIYKIYKQNDSSEFRFKLDQLAFLGSGFIYDKRGYVLTAAHNITNTEGTFVI 240 KNEDNFYVATVAGLHRESDICVMKIISEEQFNHIPLNPSRELLKPGETVITYGQIQNFDKGTCSIGVVNQPRQTFTKFEN 320 FSEKEKTCLYPFIQISNPINKGMSGSPLIDKHGNLVGMIQKKIDNYGLALPVNILKNITTHLQEEGTYKEPFLGIVLREK 400 EQSISAVYKNCKNEELKIQDVLVNSPADVAGITKGDIMLRINNTKIKNICDVHEILNSTSDGYVTVDIIRHGKNKKIKVK 480 M 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 . 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1428400 2 -----MR|GT 0.099 . PKNH_1428400 12 MWILYCR|TK 0.079 . PKNH_1428400 14 ILYCRTK|HL 0.064 . PKNH_1428400 17 CRTKHLR|IR 0.087 . PKNH_1428400 19 TKHLRIR|DS 0.121 . PKNH_1428400 26 DSFPFSK|LR 0.059 . PKNH_1428400 28 FPFSKLR|AE 0.080 . PKNH_1428400 35 AEQFADK|FV 0.084 . PKNH_1428400 38 FADKFVR|NY 0.151 . PKNH_1428400 48 DIINGVK|NE 0.056 . PKNH_1428400 91 DCTFEHK|PE 0.057 . PKNH_1428400 95 EHKPEHR|LS 0.096 . PKNH_1428400 118 QNTQPEK|KG 0.060 . PKNH_1428400 119 NTQPEKK|GT 0.142 . PKNH_1428400 123 EKKGTSK|LA 0.066 . PKNH_1428400 134 LIIYYVK|EY 0.060 . PKNH_1428400 138 YVKEYVK|YV 0.077 . PKNH_1428400 157 LCDTIFR|TL 0.080 . PKNH_1428400 164 TLFVLPK|SY 0.083 . PKNH_1428400 171 SYLEFPK|QL 0.066 . PKNH_1428400 192 SFVTIYK|IY 0.060 . PKNH_1428400 195 TIYKIYK|QN 0.077 . PKNH_1428400 203 NDSSEFR|FK 0.130 . PKNH_1428400 205 SSEFRFK|LD 0.067 . PKNH_1428400 220 SGFIYDK|RG 0.055 . PKNH_1428400 221 GFIYDKR|GY 0.117 . PKNH_1428400 241 EGTFVIK|NE 0.059 . PKNH_1428400 256 TVAGLHR|ES 0.093 . PKNH_1428400 264 SDICVMK|II 0.086 . PKNH_1428400 280 IPLNPSR|EL 0.095 . PKNH_1428400 284 PSRELLK|PG 0.075 . PKNH_1428400 300 QIQNFDK|GT 0.077 . PKNH_1428400 312 GVVNQPR|QT 0.134 . PKNH_1428400 317 PRQTFTK|FE 0.083 . PKNH_1428400 324 FENFSEK|EK 0.065 . PKNH_1428400 326 NFSEKEK|TC 0.059 . PKNH_1428400 341 ISNPINK|GM 0.077 . PKNH_1428400 351 GSPLIDK|HG 0.062 . PKNH_1428400 361 LVGMIQK|KI 0.066 . PKNH_1428400 362 VGMIQKK|ID 0.106 . PKNH_1428400 376 LPVNILK|NI 0.069 . PKNH_1428400 389 QEEGTYK|EP 0.061 . PKNH_1428400 398 FLGIVLR|EK 0.126 . PKNH_1428400 400 GIVLREK|EQ 0.060 . PKNH_1428400 409 SISAVYK|NC 0.081 . PKNH_1428400 412 AVYKNCK|NE 0.061 . PKNH_1428400 417 CKNEELK|IQ 0.066 . PKNH_1428400 434 DVAGITK|GD 0.061 . PKNH_1428400 440 KGDIMLR|IN 0.086 . PKNH_1428400 445 LRINNTK|IK 0.070 . PKNH_1428400 447 INNTKIK|NI 0.091 . PKNH_1428400 470 VTVDIIR|HG 0.067 . PKNH_1428400 473 DIIRHGK|NK 0.129 . PKNH_1428400 475 IRHGKNK|KI 0.086 . PKNH_1428400 476 RHGKNKK|IK 0.101 . PKNH_1428400 478 GKNKKIK|VK 0.083 . PKNH_1428400 480 NKKIKVK|M- 0.078 . ____________________________^_________________

  • Fasta :-

    >PKNH_1428400 ATGAGGGGAACCTACATGTGGATATTATACTGCAGAACAAAGCATCTGCGGATTCGCGAT TCCTTCCCTTTCTCGAAGCTGCGTGCTGAACAATTTGCAGACAAATTTGTGCGCAATTAT GGTGACATTATTAATGGTGTAAAAAATGAGCTAAACATTATGTGTAGTTTTTGTAACATG TCCATGGGAATGGTTCATGTGTCTCTCTGCGAAAGTGCGATCGGCAGCCCTATCACCCCT GTCGATGGATGCGATTGTACCTTTGAGCATAAGCCAGAACATCGCCTCAGTCACGGTGCC CATGACGCACCCTCAGAGAACGACCAGCTAGAGCAAAATACACAACCCGAGAAGAAGGGA ACTTCTAAATTAGCAACCTATCTAATTATTTACTACGTTAAAGAATATGTGAAATATGTT GCCCATTCTTTACTTCATTTTTGTTTTAATTTATGTGATACAATTTTTCGGACCCTTTTT GTTTTGCCAAAGAGCTATTTAGAATTTCCAAAGCAGTTAGATTATTATTCGTCCATTTCG GACAACCTTTTGACCAGCTTTGTTACGATTTATAAAATCTACAAACAAAATGACTCTTCA GAATTTCGCTTTAAGTTAGATCAACTGGCATTCCTCGGTTCTGGATTCATTTACGACAAA AGAGGATACGTTCTAACGGCTGCACATAACATAACGAATACAGAGGGAACATTCGTTATC AAAAATGAAGACAACTTTTATGTGGCAACCGTGGCTGGTTTGCACAGGGAATCAGACATA TGCGTCATGAAAATTATCTCGGAGGAACAGTTTAACCACATACCTCTAAACCCCAGCAGG GAATTGTTGAAGCCAGGAGAAACAGTAATCACTTATGGACAAATACAGAATTTCGATAAA GGGACCTGCAGTATCGGTGTCGTAAATCAACCTAGACAGACCTTCACCAAATTTGAAAAC TTTTCCGAAAAGGAAAAAACCTGTTTATATCCCTTTATTCAAATAAGCAATCCGATTAAC AAAGGCATGTCGGGATCGCCACTAATCGACAAGCATGGAAATCTCGTAGGAATGATACAA AAAAAAATAGATAATTACGGATTGGCCTTACCCGTGAATATTTTAAAAAACATCACAACC CACTTGCAAGAAGAAGGGACATACAAGGAACCATTTCTGGGAATTGTCTTGAGAGAAAAA GAACAAAGTATCTCCGCAGTTTATAAAAATTGCAAAAATGAAGAACTAAAAATACAGGAC GTTTTGGTTAACTCACCTGCGGACGTTGCCGGAATAACGAAAGGAGATATCATGTTGAGG ATTAACAACACGAAGATTAAAAACATTTGCGATGTGCACGAAATTTTGAACAGCACATCG GATGGCTACGTCACAGTCGACATTATTCGCCATGGAAAAAACAAAAAAATAAAAGTGAAA ATGTGA
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  • Fasta :-

    MRGTYMWILYCRTKHLRIRDSFPFSKLRAEQFADKFVRNYGDIINGVKNELNIMCSFCNM SMGMVHVSLCESAIGSPITPVDGCDCTFEHKPEHRLSHGAHDAPSENDQLEQNTQPEKKG TSKLATYLIIYYVKEYVKYVAHSLLHFCFNLCDTIFRTLFVLPKSYLEFPKQLDYYSSIS DNLLTSFVTIYKIYKQNDSSEFRFKLDQLAFLGSGFIYDKRGYVLTAAHNITNTEGTFVI KNEDNFYVATVAGLHRESDICVMKIISEEQFNHIPLNPSRELLKPGETVITYGQIQNFDK GTCSIGVVNQPRQTFTKFENFSEKEKTCLYPFIQISNPINKGMSGSPLIDKHGNLVGMIQ KKIDNYGLALPVNILKNITTHLQEEGTYKEPFLGIVLREKEQSISAVYKNCKNEELKIQD VLVNSPADVAGITKGDIMLRINNTKIKNICDVHEILNSTSDGYVTVDIIRHGKNKKIKVK M

  • title: protein binding site
  • coordinates: F392,L393,G394,I395,L397,N448,I449,V452,H453
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_1428400322 SFENFSEKEK0.994unspPKNH_1428400322 SFENFSEKEK0.994unspPKNH_1428400322 SFENFSEKEK0.994unspPKNH_142840097 SEHRLSHGAH0.996unspPKNH_1428400105 SHDAPSENDQ0.992unsp

PK8_1150c      PK8_1160c      PKH_142640      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India