PKNH_1428500 | GTP-binding protein YihA3, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1428500SP0.2154430.6775330.107024CS pos: 25-26. LCC-FI. Pr: 0.4589
No Results

  • Fasta :-

    >PKNH_1428500 MRNLVKSPVSPFFWVLFLNVIRLCCFIPKRETTKLVTSSNFRLFEDTKKKEDLEYKPFKN ISFNKLKSNLKNFLVVNKKFSISDVKQVSFLGKFYNYEKIENYGVNEICILGRSNVGKST FLRNFIKYLINVNEHANVKVSKNSGCTRSINLYSFENGKKKKLFILTDMPGFGYAAGIGK KKMEFLRKNLEDYIFLRNQICLFFVLIDMSVDIQKIDVSIVDAIKKTNIPFRVICTKSDK FSTKADERLEAIKNFYQLEKIPIHISKFSTHNYINIFKEIQHHCNLDIP
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1428500.fa Sequence name : PKNH_1428500 Sequence length : 289 VALUES OF COMPUTED PARAMETERS Coef20 : 4.456 CoefTot : -0.013 ChDiff : 22 ZoneTo : 44 KR : 7 DE : 1 CleavSite : 32 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.365 2.029 0.265 0.666 MesoH : -1.093 0.425 -0.477 0.190 MuHd_075 : 28.766 16.887 6.002 7.204 MuHd_095 : 37.525 24.054 11.703 8.477 MuHd_100 : 34.560 20.122 9.663 7.545 MuHd_105 : 29.893 16.841 8.480 6.818 Hmax_075 : 13.533 11.100 -1.247 4.480 Hmax_095 : 14.088 25.638 5.350 4.681 Hmax_100 : 20.700 24.100 5.598 7.390 Hmax_105 : 20.100 17.500 4.527 7.400 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1867 0.8133 DFMC : 0.4012 0.5988 This protein is probably imported in mitochondria. f(Ser) = 0.0909 f(Arg) = 0.0909 CMi = 0.46083 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 289 PKNH_1428500 MRNLVKSPVSPFFWVLFLNVIRLCCFIPKRETTKLVTSSNFRLFEDTKKKEDLEYKPFKNISFNKLKSNLKNFLVVNKKF 80 SISDVKQVSFLGKFYNYEKIENYGVNEICILGRSNVGKSTFLRNFIKYLINVNEHANVKVSKNSGCTRSINLYSFENGKK 160 KKLFILTDMPGFGYAAGIGKKKMEFLRKNLEDYIFLRNQICLFFVLIDMSVDIQKIDVSIVDAIKKTNIPFRVICTKSDK 240 FSTKADERLEAIKNFYQLEKIPIHISKFSTHNYINIFKEIQHHCNLDIP 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1428500 2 -----MR|NL 0.100 . PKNH_1428500 6 -MRNLVK|SP 0.069 . PKNH_1428500 22 LFLNVIR|LC 0.071 . PKNH_1428500 29 LCCFIPK|RE 0.066 . PKNH_1428500 30 CCFIPKR|ET 0.172 . PKNH_1428500 34 PKRETTK|LV 0.076 . PKNH_1428500 42 VTSSNFR|LF 0.087 . PKNH_1428500 48 RLFEDTK|KK 0.064 . PKNH_1428500 49 LFEDTKK|KE 0.078 . PKNH_1428500 50 FEDTKKK|ED 0.080 . PKNH_1428500 56 KEDLEYK|PF 0.059 . PKNH_1428500 59 LEYKPFK|NI 0.070 . PKNH_1428500 65 KNISFNK|LK 0.065 . PKNH_1428500 67 ISFNKLK|SN 0.085 . PKNH_1428500 71 KLKSNLK|NF 0.056 . PKNH_1428500 78 NFLVVNK|KF 0.062 . PKNH_1428500 79 FLVVNKK|FS 0.099 . PKNH_1428500 86 FSISDVK|QV 0.075 . PKNH_1428500 93 QVSFLGK|FY 0.075 . PKNH_1428500 99 KFYNYEK|IE 0.059 . PKNH_1428500 113 EICILGR|SN 0.104 . PKNH_1428500 118 GRSNVGK|ST 0.132 . PKNH_1428500 123 GKSTFLR|NF 0.128 . PKNH_1428500 127 FLRNFIK|YL 0.079 . PKNH_1428500 139 NEHANVK|VS 0.060 . PKNH_1428500 142 ANVKVSK|NS 0.075 . PKNH_1428500 148 KNSGCTR|SI 0.145 . PKNH_1428500 159 YSFENGK|KK 0.055 . PKNH_1428500 160 SFENGKK|KK 0.087 . PKNH_1428500 161 FENGKKK|KL 0.129 . PKNH_1428500 162 ENGKKKK|LF 0.094 . PKNH_1428500 180 YAAGIGK|KK 0.060 . PKNH_1428500 181 AAGIGKK|KM 0.085 . PKNH_1428500 182 AGIGKKK|ME 0.083 . PKNH_1428500 187 KKMEFLR|KN 0.076 . PKNH_1428500 188 KMEFLRK|NL 0.105 . PKNH_1428500 197 EDYIFLR|NQ 0.079 . PKNH_1428500 215 MSVDIQK|ID 0.062 . PKNH_1428500 225 SIVDAIK|KT 0.059 . PKNH_1428500 226 IVDAIKK|TN 0.082 . PKNH_1428500 232 KTNIPFR|VI 0.125 . PKNH_1428500 237 FRVICTK|SD 0.078 . PKNH_1428500 240 ICTKSDK|FS 0.069 . PKNH_1428500 244 SDKFSTK|AD 0.086 . PKNH_1428500 248 STKADER|LE 0.070 . PKNH_1428500 253 ERLEAIK|NF 0.066 . PKNH_1428500 260 NFYQLEK|IP 0.060 . PKNH_1428500 267 IPIHISK|FS 0.078 . PKNH_1428500 278 NYINIFK|EI 0.060 . ____________________________^_________________

  • Fasta :-

    >PKNH_1428500 ATGCGAAACTTAGTTAAATCGCCCGTCTCCCCTTTTTTTTGGGTGCTTTTCCTTAATGTG ATTCGTCTTTGTTGTTTCATTCCCAAAAGGGAAACCACCAAACTGGTGACAAGCTCAAAT TTCCGCCTTTTTGAAGACACTAAAAAGAAGGAAGATCTCGAATATAAGCCTTTCAAAAAT ATCAGCTTTAACAAGCTTAAGAGCAATTTGAAAAACTTTCTTGTAGTCAACAAAAAGTTT AGCATATCGGATGTTAAGCAGGTTTCCTTTTTAGGAAAGTTTTACAATTACGAGAAAATT GAGAATTACGGTGTAAATGAAATATGCATACTTGGGCGGAGCAACGTAGGGAAGTCAACC TTTTTGAGGAACTTCATAAAATATCTTATCAACGTGAATGAGCATGCAAATGTGAAGGTT TCCAAGAACAGCGGGTGTACAAGGTCGATAAATTTATATTCTTTTGAAAATGGCAAGAAA AAAAAGTTGTTCATTTTGACAGACATGCCTGGATTTGGCTATGCTGCAGGAATAGGCAAA AAGAAGATGGAGTTCTTGAGAAAGAACTTAGAGGACTACATATTTCTGCGAAATCAAATA TGCCTGTTTTTTGTTCTTATCGACATGAGCGTGGACATACAGAAGATTGACGTATCCATA GTGGACGCGATAAAAAAAACGAACATACCTTTCAGAGTCATCTGCACAAAGAGTGACAAG TTCAGCACAAAAGCTGATGAACGTCTTGAAGCAATCAAAAATTTTTATCAGCTTGAAAAA ATCCCCATACATATTTCGAAATTTTCGACGCACAATTACATAAACATTTTCAAGGAAATT CAACATCACTGCAATTTGGACATCCCGTGA
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  • Fasta :-

    MRNLVKSPVSPFFWVLFLNVIRLCCFIPKRETTKLVTSSNFRLFEDTKKKEDLEYKPFKN ISFNKLKSNLKNFLVVNKKFSISDVKQVSFLGKFYNYEKIENYGVNEICILGRSNVGKST FLRNFIKYLINVNEHANVKVSKNSGCTRSINLYSFENGKKKKLFILTDMPGFGYAAGIGK KKMEFLRKNLEDYIFLRNQICLFFVLIDMSVDIQKIDVSIVDAIKKTNIPFRVICTKSDK FSTKADERLEAIKNFYQLEKIPIHISKFSTHNYINIFKEIQHHCNLDIP

  • title: GTP/Mg2+ binding site
  • coordinates: S114,N115,V116,G117,K118,S119,T120,G171,T236,K237,D239,S269,T270,H271
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_142850081 SNKKFSISDV0.992unspPKNH_1428500242 SSDKFSTKAD0.997unsp

PK8_1160c      PKH_142645      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India