PKNH_1437500 | PPPDE peptidase domain-containing protein, putative

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_IDPredictionOTHERSPmTPCS_Position
PKNH_1437500OTHER0.9943530.0044070.001240
No Results

  • Fasta :-

    >PKNH_1437500 MSSFNVKLKIYDLSRGMVKLWSPFLIGKQINGVWHTAVWVYDMEYFYGGGIMCLAPSEFE SYYDIQPVNVVDMGITELQQSHFHEYLNGIQPNFTEDKYNLVNWNCNNFTNEICNFLVGK NIPQYILDTPKEVMSTTKGKLILDMMQSYQTNIAPGFETNSSLLNNGSNEESKGANNRAT CSKEPEVNELPKVPSVSLDNFFNENKIENLLDEYIKNEKYDVNEKKDFLSFLKNLLDNVS TNPDILKNRYVHVTNFPKFQNEDGSSEYNKILSSLNFFQGYIENDEINNLQKFTIFVDPK YNKMHAFTEHLDLFLNKNVFLKNPDKAIFKMETLNFKDMCEYAAYRDKKKSNSNDVLIFI SEAFLTNHFDVTNEKNDLSHFNKVKAGICADPKVEREFLSSTSDLLEGRINELHSSE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1437500.fa Sequence name : PKNH_1437500 Sequence length : 417 VALUES OF COMPUTED PARAMETERS Coef20 : 4.225 CoefTot : -1.457 ChDiff : -16 ZoneTo : 41 KR : 5 DE : 1 CleavSite : 17 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.547 1.135 -0.045 0.521 MesoH : -0.317 0.236 -0.381 0.297 MuHd_075 : 29.428 14.565 8.298 6.381 MuHd_095 : 38.100 23.386 8.331 7.751 MuHd_100 : 40.371 21.955 9.049 8.254 MuHd_105 : 43.007 21.417 9.982 8.577 Hmax_075 : 17.850 17.850 2.907 7.338 Hmax_095 : 20.500 19.700 2.528 7.350 Hmax_100 : 18.300 15.500 1.884 6.070 Hmax_105 : 19.133 18.667 3.105 6.487 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2192 0.7808 DFMC : 0.4620 0.5380 This protein is probably imported in mitochondria. f(Ser) = 0.0976 f(Arg) = 0.0244 CMi = 0.93677 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 417 PKNH_1437500 MSSFNVKLKIYDLSRGMVKLWSPFLIGKQINGVWHTAVWVYDMEYFYGGGIMCLAPSEFESYYDIQPVNVVDMGITELQQ 80 SHFHEYLNGIQPNFTEDKYNLVNWNCNNFTNEICNFLVGKNIPQYILDTPKEVMSTTKGKLILDMMQSYQTNIAPGFETN 160 SSLLNNGSNEESKGANNRATCSKEPEVNELPKVPSVSLDNFFNENKIENLLDEYIKNEKYDVNEKKDFLSFLKNLLDNVS 240 TNPDILKNRYVHVTNFPKFQNEDGSSEYNKILSSLNFFQGYIENDEINNLQKFTIFVDPKYNKMHAFTEHLDLFLNKNVF 320 LKNPDKAIFKMETLNFKDMCEYAAYRDKKKSNSNDVLIFISEAFLTNHFDVTNEKNDLSHFNKVKAGICADPKVEREFLS 400 STSDLLEGRINELHSSE 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1437500 7 MSSFNVK|LK 0.066 . PKNH_1437500 9 SFNVKLK|IY 0.084 . PKNH_1437500 15 KIYDLSR|GM 0.074 . PKNH_1437500 19 LSRGMVK|LW 0.073 . PKNH_1437500 28 SPFLIGK|QI 0.080 . PKNH_1437500 98 PNFTEDK|YN 0.061 . PKNH_1437500 120 CNFLVGK|NI 0.071 . PKNH_1437500 131 YILDTPK|EV 0.068 . PKNH_1437500 138 EVMSTTK|GK 0.064 . PKNH_1437500 140 MSTTKGK|LI 0.079 . PKNH_1437500 173 GSNEESK|GA 0.079 . PKNH_1437500 178 SKGANNR|AT 0.146 . PKNH_1437500 183 NRATCSK|EP 0.073 . PKNH_1437500 192 EVNELPK|VP 0.074 . PKNH_1437500 206 NFFNENK|IE 0.053 . PKNH_1437500 216 LLDEYIK|NE 0.054 . PKNH_1437500 219 EYIKNEK|YD 0.057 . PKNH_1437500 225 KYDVNEK|KD 0.053 . PKNH_1437500 226 YDVNEKK|DF 0.126 . PKNH_1437500 233 DFLSFLK|NL 0.057 . PKNH_1437500 247 TNPDILK|NR 0.061 . PKNH_1437500 249 PDILKNR|YV 0.133 . PKNH_1437500 258 HVTNFPK|FQ 0.066 . PKNH_1437500 270 GSSEYNK|IL 0.083 . PKNH_1437500 292 EINNLQK|FT 0.073 . PKNH_1437500 300 TIFVDPK|YN 0.071 . PKNH_1437500 303 VDPKYNK|MH 0.058 . PKNH_1437500 317 LDLFLNK|NV 0.075 . PKNH_1437500 322 NKNVFLK|NP 0.076 . PKNH_1437500 326 FLKNPDK|AI 0.074 . PKNH_1437500 330 PDKAIFK|ME 0.059 . PKNH_1437500 337 METLNFK|DM 0.062 . PKNH_1437500 346 CEYAAYR|DK 0.094 . PKNH_1437500 348 YAAYRDK|KK 0.068 . PKNH_1437500 349 AAYRDKK|KS 0.240 . PKNH_1437500 350 AYRDKKK|SN 0.169 . PKNH_1437500 375 FDVTNEK|ND 0.054 . PKNH_1437500 383 DLSHFNK|VK 0.070 . PKNH_1437500 385 SHFNKVK|AG 0.068 . PKNH_1437500 393 GICADPK|VE 0.059 . PKNH_1437500 396 ADPKVER|EF 0.077 . PKNH_1437500 409 SDLLEGR|IN 0.073 . ____________________________^_________________

  • Fasta :-

    >PKNH_1437500 ATGTCGTCCTTCAATGTCAAGCTGAAGATATACGATTTGTCCAGGGGAATGGTAAAGTTG TGGTCCCCCTTCTTGATTGGAAAACAAATAAATGGCGTGTGGCACACTGCCGTTTGGGTC TATGACATGGAGTACTTCTACGGTGGAGGAATCATGTGTCTGGCTCCAAGCGAGTTCGAG TCTTATTATGATATCCAGCCTGTGAACGTTGTTGACATGGGAATAACCGAACTGCAACAA TCGCACTTTCACGAATATCTAAACGGCATTCAGCCAAATTTTACAGAAGACAAGTACAAC CTGGTTAACTGGAATTGTAACAATTTTACAAACGAAATATGCAATTTTCTGGTTGGAAAA AATATACCTCAATACATTTTGGACACCCCGAAGGAAGTCATGTCGACAACTAAAGGAAAA TTAATTTTAGACATGATGCAGTCGTACCAAACTAACATCGCCCCCGGGTTTGAAACGAAT TCATCTTTATTAAACAATGGAAGTAATGAGGAAAGTAAAGGTGCAAATAACAGAGCGACA TGCAGCAAGGAACCGGAAGTTAATGAACTCCCCAAAGTTCCAAGTGTGTCATTAGATAAT TTTTTTAACGAAAATAAAATAGAAAATTTATTGGATGAATATATAAAAAATGAAAAATAT GATGTGAATGAAAAAAAAGATTTTCTAAGTTTTCTGAAAAACCTTCTAGATAACGTAAGC ACAAATCCAGATATTTTAAAAAACCGTTATGTGCATGTTACAAATTTTCCTAAGTTCCAG AACGAAGACGGAAGTAGTGAATATAATAAGATTTTGTCGTCCTTGAATTTTTTCCAAGGA TATATAGAAAATGATGAAATAAATAATTTGCAAAAGTTTACTATTTTTGTCGATCCCAAG TATAATAAAATGCACGCCTTTACAGAACATTTAGATTTATTTTTAAACAAGAATGTTTTT TTAAAGAATCCAGATAAAGCCATTTTCAAAATGGAAACTTTGAATTTTAAGGACATGTGT GAATATGCTGCTTATCGTGATAAAAAAAAAAGCAACTCGAATGATGTGCTTATTTTTATA TCTGAAGCTTTTTTAACAAATCATTTTGATGTCACCAATGAGAAAAATGACCTTAGCCAT TTCAATAAAGTGAAGGCTGGTATATGTGCTGACCCCAAGGTGGAAAGGGAATTCTTGTCG AGCACATCGGATCTTCTCGAAGGACGCATAAATGAGTTGCACTCATCTGAGTGA
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  • Fasta :-

    MSSFNVKLKIYDLSRGMVKLWSPFLIGKQINGVWHTAVWVYDMEYFYGGGIMCLAPSEFE SYYDIQPVNVVDMGITELQQSHFHEYLNGIQPNFTEDKYNLVNWNCNNFTNEICNFLVGK NIPQYILDTPKEVMSTTKGKLILDMMQSYQTNIAPGFETNSSLLNNGSNEESKGANNRAT CSKEPEVNELPKVPSVSLDNFFNENKIENLLDEYIKNEKYDVNEKKDFLSFLKNLLDNVS TNPDILKNRYVHVTNFPKFQNEDGSSEYNKILSSLNFFQGYIENDEINNLQKFTIFVDPK YNKMHAFTEHLDLFLNKNVFLKNPDKAIFKMETLNFKDMCEYAAYRDKKKSNSNDVLIFI SEAFLTNHFDVTNEKNDLSHFNKVKAGICADPKVEREFLSSTSDLLEGRINELHSSE

    No Results
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No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_1437500401 SEFLSSTSDL0.994unspPKNH_1437500401 SEFLSSTSDL0.994unspPKNH_1437500401 SEFLSSTSDL0.994unspPKNH_1437500129 TYILDTPKEV0.994unspPKNH_1437500351 SDKKKSNSND0.992unsp

PK12_1600w      PKH_143500      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India