PKNH_1468600 | 26S protease regulatory subunit 8, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1468600OTHER0.9998550.0000650.000080
No Results

  • Fasta :-

    >PKNH_1468600 MATVDMQVRSGELPEESKKDQKNDPNGVNKSEEEMQSGIKTYYEMKIEEYESIINKKLQN KKRLEAQRNELNTRVRELCDEIQYLLEAASYVGEIVKPMGKNKVLVKINPEGKYVVDIAH SINIAQCTPNTRVALYNDSYKLHKILPSKVDPLVSLMKVEKVPDSTYEMVGGLEQQVKEV KEVIELPVKHPEIFESLGISQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSQRIEGEHGDSEVQRTMMELLNQLDG FESTQNIKVIMCTNRIDILDEALLRPGRIDRKIEFPNPNVEARMEILKIHSRKMNLMRGI DMMKIATDMNNCSGAEVKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKQDAEKNFTLR KLWK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1468600.fa Sequence name : PKNH_1468600 Sequence length : 424 VALUES OF COMPUTED PARAMETERS Coef20 : 3.284 CoefTot : 0.141 ChDiff : -4 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.335 0.788 -0.063 0.398 MesoH : -0.751 0.175 -0.413 0.161 MuHd_075 : 9.857 6.633 1.565 1.962 MuHd_095 : 15.874 4.462 2.397 0.741 MuHd_100 : 24.316 1.376 4.892 1.339 MuHd_105 : 32.264 6.416 7.167 3.111 Hmax_075 : -3.500 3.300 -2.847 1.000 Hmax_095 : 1.050 -0.175 -2.399 1.100 Hmax_100 : 10.000 3.600 0.254 2.070 Hmax_105 : 5.250 0.900 -1.605 1.090 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9405 0.0595 DFMC : 0.8752 0.1248
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 424 PKNH_1468600 MATVDMQVRSGELPEESKKDQKNDPNGVNKSEEEMQSGIKTYYEMKIEEYESIINKKLQNKKRLEAQRNELNTRVRELCD 80 EIQYLLEAASYVGEIVKPMGKNKVLVKINPEGKYVVDIAHSINIAQCTPNTRVALYNDSYKLHKILPSKVDPLVSLMKVE 160 KVPDSTYEMVGGLEQQVKEVKEVIELPVKHPEIFESLGISQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 240 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSQRIEGEHGDSEVQRTMMELLNQLDGFESTQNIKVIMCTNRIDILD 320 EALLRPGRIDRKIEFPNPNVEARMEILKIHSRKMNLMRGIDMMKIATDMNNCSGAEVKAVCTEAGMFALRERRVHVTQED 400 FEMAVAKVMKQDAEKNFTLRKLWK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ........................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1468600 9 TVDMQVR|SG 0.120 . PKNH_1468600 18 ELPEESK|KD 0.056 . PKNH_1468600 19 LPEESKK|DQ 0.104 . PKNH_1468600 22 ESKKDQK|ND 0.059 . PKNH_1468600 30 DPNGVNK|SE 0.108 . PKNH_1468600 40 EMQSGIK|TY 0.056 . PKNH_1468600 46 KTYYEMK|IE 0.059 . PKNH_1468600 56 YESIINK|KL 0.064 . PKNH_1468600 57 ESIINKK|LQ 0.096 . PKNH_1468600 61 NKKLQNK|KR 0.061 . PKNH_1468600 62 KKLQNKK|RL 0.114 . PKNH_1468600 63 KLQNKKR|LE 0.171 . PKNH_1468600 68 KRLEAQR|NE 0.074 . PKNH_1468600 74 RNELNTR|VR 0.073 . PKNH_1468600 76 ELNTRVR|EL 0.116 . PKNH_1468600 97 YVGEIVK|PM 0.063 . PKNH_1468600 101 IVKPMGK|NK 0.053 . PKNH_1468600 103 KPMGKNK|VL 0.076 . PKNH_1468600 107 KNKVLVK|IN 0.064 . PKNH_1468600 113 KINPEGK|YV 0.103 . PKNH_1468600 132 QCTPNTR|VA 0.068 . PKNH_1468600 141 LYNDSYK|LH 0.058 . PKNH_1468600 144 DSYKLHK|IL 0.062 . PKNH_1468600 149 HKILPSK|VD 0.057 . PKNH_1468600 158 PLVSLMK|VE 0.054 . PKNH_1468600 161 SLMKVEK|VP 0.064 . PKNH_1468600 178 GLEQQVK|EV 0.087 . PKNH_1468600 181 QQVKEVK|EV 0.069 . PKNH_1468600 189 VIELPVK|HP 0.060 . PKNH_1468600 203 LGISQPK|GV 0.082 . PKNH_1468600 215 GPPGTGK|TL 0.059 . PKNH_1468600 220 GKTLLAR|AV 0.128 . PKNH_1468600 232 TECTFIR|VS 0.128 . PKNH_1468600 241 GSELVQK|YI 0.105 . PKNH_1468600 248 YIGEGSR|MV 0.115 . PKNH_1468600 251 EGSRMVR|EL 0.260 . PKNH_1468600 258 ELFVMAR|EH 0.090 . PKNH_1468600 277 DSIGSQR|IE 0.114 . PKNH_1468600 289 GDSEVQR|TM 0.152 . PKNH_1468600 308 ESTQNIK|VI 0.055 . PKNH_1468600 315 VIMCTNR|ID 0.079 . PKNH_1468600 325 LDEALLR|PG 0.072 . PKNH_1468600 328 ALLRPGR|ID 0.204 . PKNH_1468600 331 RPGRIDR|KI 0.277 . PKNH_1468600 332 PGRIDRK|IE 0.075 . PKNH_1468600 343 NPNVEAR|ME 0.139 . PKNH_1468600 348 ARMEILK|IH 0.070 . PKNH_1468600 352 ILKIHSR|KM 0.075 . PKNH_1468600 353 LKIHSRK|MN 0.101 . PKNH_1468600 358 RKMNLMR|GI 0.139 . PKNH_1468600 364 RGIDMMK|IA 0.071 . PKNH_1468600 378 CSGAEVK|AV 0.103 . PKNH_1468600 390 AGMFALR|ER 0.080 . PKNH_1468600 392 MFALRER|RV 0.129 . PKNH_1468600 393 FALRERR|VH 0.353 . PKNH_1468600 407 FEMAVAK|VM 0.065 . PKNH_1468600 410 AVAKVMK|QD 0.074 . PKNH_1468600 415 MKQDAEK|NF 0.058 . PKNH_1468600 420 EKNFTLR|KL 0.106 . PKNH_1468600 421 KNFTLRK|LW 0.077 . PKNH_1468600 424 TLRKLWK|-- 0.080 . ____________________________^_________________

  • Fasta :-

    >PKNH_1468600 ATGGCGACCGTGGACATGCAAGTACGGTCGGGCGAACTCCCGGAGGAGTCCAAGAAGGAC CAAAAGAACGATCCCAATGGAGTAAACAAAAGCGAGGAGGAAATGCAATCAGGCATCAAG ACATATTACGAAATGAAAATTGAGGAATACGAGTCGATAATAAATAAAAAGTTACAAAAC AAAAAAAGGCTGGAAGCGCAGAGAAATGAATTGAATACAAGAGTAAGAGAGCTCTGTGAT GAAATTCAGTATCTATTAGAGGCTGCATCTTATGTTGGAGAAATTGTAAAACCCATGGGG AAAAATAAAGTGCTAGTGAAAATAAATCCAGAAGGTAAATACGTAGTGGATATAGCACAT AGCATAAACATCGCCCAGTGTACACCGAACACGAGAGTAGCATTATATAATGATTCATAT AAGCTACATAAGATCTTACCAAGTAAAGTAGATCCTCTTGTGTCCCTTATGAAAGTGGAG AAGGTACCTGACTCCACGTATGAAATGGTTGGTGGCTTAGAGCAACAAGTGAAAGAAGTA AAGGAAGTTATCGAGTTGCCAGTGAAGCATCCAGAAATATTCGAATCCTTGGGAATTTCG CAACCTAAGGGGGTTTTACTATATGGGCCCCCAGGGACAGGGAAAACCTTACTAGCCAGA GCAGTAGCACACCATACAGAATGTACGTTTATAAGGGTGTCTGGGTCAGAACTTGTACAA AAGTATATTGGTGAAGGATCGAGAATGGTGAGAGAATTATTTGTCATGGCAAGAGAACAT GCTCCATCCATTATTTTCATGGATGAAATCGACTCCATTGGAAGTCAAAGGATAGAAGGA GAACATGGAGACTCTGAGGTACAGAGAACGATGATGGAACTCCTAAATCAGTTAGACGGA TTTGAATCCACACAAAATATTAAAGTGATCATGTGCACAAACAGAATTGATATTCTCGAT GAGGCTTTACTAAGACCAGGAAGAATTGACAGAAAAATTGAATTTCCAAATCCTAATGTT GAAGCCCGTATGGAAATTTTAAAAATTCACAGCAGGAAGATGAACCTTATGAGAGGAATT GATATGATGAAAATTGCTACGGATATGAACAACTGCTCTGGGGCAGAGGTGAAGGCTGTG TGTACAGAGGCTGGAATGTTTGCTCTACGCGAGAGGCGAGTGCACGTTACACAAGAGGAT TTCGAGATGGCCGTCGCAAAGGTTATGAAGCAGGATGCGGAAAAGAATTTCACCCTCCGC AAATTGTGGAAGTAG
  • Download Fasta

  • Fasta :-

    MATVDMQVRSGELPEESKKDQKNDPNGVNKSEEEMQSGIKTYYEMKIEEYESIINKKLQN KKRLEAQRNELNTRVRELCDEIQYLLEAASYVGEIVKPMGKNKVLVKINPEGKYVVDIAH SINIAQCTPNTRVALYNDSYKLHKILPSKVDPLVSLMKVEKVPDSTYEMVGGLEQQVKEV KEVIELPVKHPEIFESLGISQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSQRIEGEHGDSEVQRTMMELLNQLDG FESTQNIKVIMCTNRIDILDEALLRPGRIDRKIEFPNPNVEARMEILKIHSRKMNLMRGI DMMKIATDMNNCSGAEVKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKQDAEKNFTLR KLWK

  • title: ATP binding site
  • coordinates: P210,P211,G212,T213,G214,K215,T216,L217,D268,N314
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_1468600234 SFIRVSGSEL0.996unspPKNH_1468600234 SFIRVSGSEL0.996unspPKNH_1468600234 SFIRVSGSEL0.996unspPKNH_146860017 SLPEESKKDQ0.998unspPKNH_1468600165 SKVPDSTYEM0.996unsp

PK12_4740c      PKH_146620      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India