PVX_001860 | autophagy-related protein 8, putative

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_IDPredictionOTHERSPmTPCS_Position
PVX_001860OTHER0.9982220.0003610.001418
No Results

  • Fasta :-

    >PVX_001860 MPSLKEEVPFESRVAETHKIRAKYPNRIPVVCEKANRSNLPEIEKKKFLVPMNMLVGEFK FILHQHINQSAYGNSMKLFREKTIYLFVNNVIPKTGLLMQELYEMYKDEDGYLYLEYSCE SCFG
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_001860.fa Sequence name : PVX_001860 Sequence length : 124 VALUES OF COMPUTED PARAMETERS Coef20 : 3.440 CoefTot : -0.132 ChDiff : 1 ZoneTo : 5 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.647 1.200 -0.118 0.527 MesoH : -1.045 -0.026 -0.602 0.145 MuHd_075 : 19.381 15.429 5.556 3.450 MuHd_095 : 11.592 11.212 3.666 3.750 MuHd_100 : 17.755 15.128 3.889 4.877 MuHd_105 : 20.352 16.984 3.969 5.219 Hmax_075 : 2.683 8.283 -1.644 3.080 Hmax_095 : -5.400 3.900 -3.256 1.800 Hmax_100 : -0.200 4.200 -3.003 2.140 Hmax_105 : 3.150 6.767 -1.019 2.835 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9204 0.0796 DFMC : 0.9353 0.0647
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 124 PVX_001860 MPSLKEEVPFESRVAETHKIRAKYPNRIPVVCEKANRSNLPEIEKKKFLVPMNMLVGEFKFILHQHINQSAYGNSMKLFR 80 EKTIYLFVNNVIPKTGLLMQELYEMYKDEDGYLYLEYSCESCFG 160 ................................................................................ 80 ............................................ 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_001860 5 --MPSLK|EE 0.058 . PVX_001860 13 EVPFESR|VA 0.078 . PVX_001860 19 RVAETHK|IR 0.062 . PVX_001860 21 AETHKIR|AK 0.092 . PVX_001860 23 THKIRAK|YP 0.074 . PVX_001860 27 RAKYPNR|IP 0.082 . PVX_001860 34 IPVVCEK|AN 0.071 . PVX_001860 37 VCEKANR|SN 0.101 . PVX_001860 45 NLPEIEK|KK 0.058 . PVX_001860 46 LPEIEKK|KF 0.093 . PVX_001860 47 PEIEKKK|FL 0.117 . PVX_001860 60 MLVGEFK|FI 0.072 . PVX_001860 77 AYGNSMK|LF 0.063 . PVX_001860 80 NSMKLFR|EK 0.105 . PVX_001860 82 MKLFREK|TI 0.066 . PVX_001860 94 VNNVIPK|TG 0.061 . PVX_001860 107 ELYEMYK|DE 0.069 . ____________________________^_________________

  • Fasta :-

    >PVX_001860 ATGCCGTCGCTGAAGGAGGAAGTGCCGTTCGAAAGCCGAGTCGCCGAGACGCACAAAATC AGAGCCAAGTACCCCAACAGAATCCCCGTGGTGTGTGAAAAGGCCAACAGATCCAACCTC CCAGAAATAGAAAAGAAAAAATTCCTAGTCCCCATGAACATGCTCGTAGGAGAGTTCAAA TTTATTCTCCACCAGCATATAAATCAGAGTGCCTATGGAAACAGTATGAAGCTATTTAGG GAGAAAACGATTTACCTTTTTGTGAACAACGTTATTCCAAAGACGGGGCTACTCATGCAG GAGCTCTATGAAATGTATAAGGACGAGGATGGCTACCTGTATTTGGAGTACAGCTGCGAG AGTTGCTTCGGCTGA
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  • Fasta :-

    MPSLKEEVPFESRVAETHKIRAKYPNRIPVVCEKANRSNLPEIEKKKFLVPMNMLVGEFK FILHQHINQSAYGNSMKLFREKTIYLFVNNVIPKTGLLMQELYEMYKDEDGYLYLEYSCE SCFG

  • title: Atg7 interaction site
  • coordinates: R27,K45,F48,G57,E58,K60,F61,I62,H64,Q65,H66,E81,T83,I84,Y85,F87,N90,V91,K94,T95,G96
IDSitePositionGscoreIscoreIDSitePositionGscoreIscore
PVX_001860S30.5510.182PVX_001860T170.5070.078
IDSitePositionGscoreIscoreIDSitePositionGscoreIscore
PVX_001860S30.5510.182PVX_001860T170.5070.078
No Results
PVX_001860      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India