PVX_003815 | serine-repeat antigen (SERA), truncated, putative

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_IDPredictionOTHERSPmTPCS_Position
PVX_003815OTHER0.9446470.0546800.000673
No Results

  • Fasta :-

    >PVX_003815 MLVLFTETFNAGALLGSNAEGLAGAESPPGGVLGGEASDGDPLTEGASEQKRMMTKGGRP ANRLGKCQTGQDPTPTIRRASPKLRRQSEGVGQANYVKVKALPFKRTIGVKINRTCGAEM GFLFIPHSSMYLTTEESKAGAFKMMTHIEDNAFPLNWRVYLPREPHTAAKRDATETKWHG RSLAGSNDGPCDEGHDFFSGGIDSGEDGAIPPMEKGDQPEGCSEEASEEESEDASEGCSE EASEEASEEQQLRISIERVLSGVYKVAADGRKVLITREELDDSLKEELKKYCQLLKKVDS SGTLEEHQMGSEMEVFDNLVNLLQKHGDETVLTLRRKLRNPAVCMKDVSEWVLKRRGLAL PDSPSSNASEKDANLGVDPKWMECVRSNSREEGAEGYNGEEDGMVNLAKLKMRSKHFCCF SGEGNQDKSNGKGPCAPKAEEEVE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_003815.fa Sequence name : PVX_003815 Sequence length : 444 VALUES OF COMPUTED PARAMETERS Coef20 : 3.993 CoefTot : 0.244 ChDiff : -20 ZoneTo : 6 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.165 1.206 0.020 0.526 MesoH : -0.927 -0.079 -0.527 0.103 MuHd_075 : 8.881 8.284 1.415 1.933 MuHd_095 : 21.363 6.338 5.233 3.134 MuHd_100 : 21.866 8.184 5.479 3.703 MuHd_105 : 18.643 8.445 4.807 3.563 Hmax_075 : 13.533 15.750 0.858 5.740 Hmax_095 : 16.800 10.800 2.046 5.050 Hmax_100 : 17.200 13.000 2.200 5.720 Hmax_105 : 18.600 14.467 2.823 6.487 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9729 0.0271 DFMC : 0.9514 0.0486
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 444 PVX_003815 MLVLFTETFNAGALLGSNAEGLAGAESPPGGVLGGEASDGDPLTEGASEQKRMMTKGGRPANRLGKCQTGQDPTPTIRRA 80 SPKLRRQSEGVGQANYVKVKALPFKRTIGVKINRTCGAEMGFLFIPHSSMYLTTEESKAGAFKMMTHIEDNAFPLNWRVY 160 LPREPHTAAKRDATETKWHGRSLAGSNDGPCDEGHDFFSGGIDSGEDGAIPPMEKGDQPEGCSEEASEEESEDASEGCSE 240 EASEEASEEQQLRISIERVLSGVYKVAADGRKVLITREELDDSLKEELKKYCQLLKKVDSSGTLEEHQMGSEMEVFDNLV 320 NLLQKHGDETVLTLRRKLRNPAVCMKDVSEWVLKRRGLALPDSPSSNASEKDANLGVDPKWMECVRSNSREEGAEGYNGE 400 EDGMVNLAKLKMRSKHFCCFSGEGNQDKSNGKGPCAPKAEEEVE 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............................................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_003815 51 EGASEQK|RM 0.060 . PVX_003815 52 GASEQKR|MM 0.369 . PVX_003815 56 QKRMMTK|GG 0.076 . PVX_003815 59 MMTKGGR|PA 0.093 . PVX_003815 63 GGRPANR|LG 0.093 . PVX_003815 66 PANRLGK|CQ 0.165 . PVX_003815 78 DPTPTIR|RA 0.107 . PVX_003815 79 PTPTIRR|AS 0.118 . PVX_003815 83 IRRASPK|LR 0.095 . PVX_003815 85 RASPKLR|RQ 0.163 . PVX_003815 86 ASPKLRR|QS 0.186 . PVX_003815 98 GQANYVK|VK 0.053 . PVX_003815 100 ANYVKVK|AL 0.071 . PVX_003815 105 VKALPFK|RT 0.069 . PVX_003815 106 KALPFKR|TI 0.228 . PVX_003815 111 KRTIGVK|IN 0.069 . PVX_003815 114 IGVKINR|TC 0.103 . PVX_003815 138 LTTEESK|AG 0.060 . PVX_003815 143 SKAGAFK|MM 0.086 . PVX_003815 158 AFPLNWR|VY 0.072 . PVX_003815 163 WRVYLPR|EP 0.098 . PVX_003815 170 EPHTAAK|RD 0.071 . PVX_003815 171 PHTAAKR|DA 0.210 . PVX_003815 177 RDATETK|WH 0.091 . PVX_003815 181 ETKWHGR|SL 0.171 . PVX_003815 215 AIPPMEK|GD 0.064 . PVX_003815 253 SEEQQLR|IS 0.086 . PVX_003815 258 LRISIER|VL 0.103 . PVX_003815 265 VLSGVYK|VA 0.091 . PVX_003815 271 KVAADGR|KV 0.109 . PVX_003815 272 VAADGRK|VL 0.078 . PVX_003815 277 RKVLITR|EE 0.066 . PVX_003815 285 ELDDSLK|EE 0.055 . PVX_003815 289 SLKEELK|KY 0.064 . PVX_003815 290 LKEELKK|YC 0.081 . PVX_003815 296 KYCQLLK|KV 0.075 . PVX_003815 297 YCQLLKK|VD 0.088 . PVX_003815 325 LVNLLQK|HG 0.064 . PVX_003815 335 ETVLTLR|RK 0.060 . PVX_003815 336 TVLTLRR|KL 0.087 . PVX_003815 337 VLTLRRK|LR 0.074 . PVX_003815 339 TLRRKLR|NP 0.270 . PVX_003815 346 NPAVCMK|DV 0.113 . PVX_003815 354 VSEWVLK|RR 0.069 . PVX_003815 355 SEWVLKR|RG 0.124 . PVX_003815 356 EWVLKRR|GL 0.107 . PVX_003815 371 SSNASEK|DA 0.102 . PVX_003815 380 NLGVDPK|WM 0.070 . PVX_003815 386 KWMECVR|SN 0.177 . PVX_003815 390 CVRSNSR|EE 0.085 . PVX_003815 409 GMVNLAK|LK 0.068 . PVX_003815 411 VNLAKLK|MR 0.066 . PVX_003815 413 LAKLKMR|SK 0.155 . PVX_003815 415 KLKMRSK|HF 0.060 . PVX_003815 428 GEGNQDK|SN 0.133 . PVX_003815 432 QDKSNGK|GP 0.062 . PVX_003815 438 KGPCAPK|AE 0.072 . ____________________________^_________________

  • Fasta :-

    >PVX_003815 ATGCTCGTCCTCTTTACTGAAACGTTTAACGCAGGTGCTCTCTTAGGGAGTAACGCGGAA GGCTTAGCAGGTGCGGAGTCCCCCCCTGGAGGCGTACTCGGGGGGGAAGCATCAGACGGA GATCCACTCACAGAAGGAGCTTCAGAACAGAAAAGGATGATGACTAAGGGTGGTAGACCG GCTAACCGTCTAGGCAAATGTCAAACGGGACAGGACCCTACTCCCACCATTCGTAGGGCA TCTCCTAAACTTAGGAGACAATCCGAAGGGGTAGGCCAAGCAAACTACGTCAAAGTAAAA GCACTACCGTTCAAAAGAACAATCGGGGTGAAGATTAACAGAACGTGTGGGGCAGAAATG GGATTCCTTTTCATCCCCCACTCGTCTATGTACCTTACAACGGAAGAGTCCAAAGCGGGA GCCTTTAAGATGATGACCCATATTGAGGATAACGCTTTTCCGCTTAACTGGAGGGTCTAC CTGCCCAGGGAGCCACACACAGCAGCAAAGCGAGACGCAACTGAGACGAAGTGGCACGGG CGATCCTTAGCAGGGAGCAATGACGGCCCGTGTGACGAGGGGCATGACTTCTTTTCTGGG GGAATTGACTCGGGGGAGGATGGAGCCATTCCCCCCATGGAGAAGGGTGATCAGCCGGAG GGGTGCTCAGAAGAAGCATCAGAGGAAGAGTCAGAGGATGCATCGGAGGGGTGCTCAGAG GAAGCGTCAGAGGAAGCGTCGGAGGAGCAGCAGCTGAGGATCTCCATCGAGCGCGTGCTG AGCGGGGTCTACAAAGTGGCTGCGGACGGAAGGAAGGTGCTAATCACGCGGGAAGAGCTA GACGACTCCCTTAAAGAGGAGCTAAAAAAATACTGCCAACTTTTGAAGAAGGTAGACAGC AGTGGAACTCTGGAAGAGCATCAGATGGGCAGCGAAATGGAAGTGTTTGATAACCTCGTC AACCTTCTGCAAAAACATGGGGACGAAACGGTTCTTACTCTTCGGAGGAAACTGAGGAAC CCAGCGGTGTGCATGAAGGATGTGAGCGAGTGGGTGCTGAAGAGGAGGGGGTTGGCCTTG CCAGACTCGCCCAGCAGCAACGCGAGTGAGAAGGACGCCAATTTGGGTGTAGATCCCAAG TGGATGGAATGTGTGAGGAGTAACTCCAGAGAGGAAGGCGCCGAGGGGTACAACGGGGAG GAAGACGGAATGGTGAATTTGGCCAAACTGAAAATGAGAAGCAAACATTTTTGCTGCTTC AGCGGTGAAGGGAACCAAGACAAGTCGAATGGAAAAGGCCCTTGCGCTCCCAAAGCTGAG GAGGAAGTGGAATGA
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  • Fasta :-

    MLVLFTETFNAGALLGSNAEGLAGAESPPGGVLGGEASDGDPLTEGASEQKRMMTKGGRP ANRLGKCQTGQDPTPTIRRASPKLRRQSEGVGQANYVKVKALPFKRTIGVKINRTCGAEM GFLFIPHSSMYLTTEESKAGAFKMMTHIEDNAFPLNWRVYLPREPHTAAKRDATETKWHG RSLAGSNDGPCDEGHDFFSGGIDSGEDGAIPPMEKGDQPEGCSEEASEEESEDASEGCSE EASEEASEEQQLRISIERVLSGVYKVAADGRKVLITREELDDSLKEELKKYCQLLKKVDS SGTLEEHQMGSEMEVFDNLVNLLQKHGDETVLTLRRKLRNPAVCMKDVSEWVLKRRGLAL PDSPSSNASEKDANLGVDPKWMECVRSNSREEGAEGYNGEEDGMVNLAKLKMRSKHFCCF SGEGNQDKSNGKGPCAPKAEEEVE

    No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PVX_003815204 SGGIDSGEDG0.996unspPVX_003815204 SGGIDSGEDG0.996unspPVX_003815204 SGGIDSGEDG0.996unspPVX_003815227 SSEEASEEES0.996unspPVX_003815283 SELDDSLKEE0.996unspPVX_003815369 SSSNASEKDA0.997unspPVX_003815389 SVRSNSREEG0.997unspPVX_00381581 SIRRASPKLR0.998unspPVX_00381588 SLRRQSEGVG0.994unsp
PVX_003815      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India