PVX_079875 | methionine aminopeptidase 1a, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_079875OTHER0.7595430.0011200.239336
No Results

  • Fasta :-

    >PVX_079875 MRKFLPALPKRNSNFHTHVLTPKINKIKVPERSSFKPTLQDGKYQITPMQSVPGHIARPP YAETGLVKHSNVDYEIKDEESIAKMKEAAKIAAQCLKLCLENSKAGVTTDEIDKMAFNFY VEKGAYPAGINFHGFPKTVCASPNEVVCHGIPNLRKLKDGDIITYDCTVYIDGVFGDCAG TTGIGTISKSHQKLVDVSKECLYKAISVCKHGQKFSEIGRVITEHATRNGFNVIQEFCGH FIGRNMHMYPLIEHHYPNGHPDDEYMQVGQIFTIEPILSEGSRKIHTWKDQWTVCTNDNA FCSQWEHTILVQQNGAEILTQCD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_079875.fa Sequence name : PVX_079875 Sequence length : 323 VALUES OF COMPUTED PARAMETERS Coef20 : 3.981 CoefTot : -1.568 ChDiff : 0 ZoneTo : 30 KR : 7 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.553 0.847 0.125 0.463 MesoH : -0.610 0.160 -0.313 0.214 MuHd_075 : 26.080 19.122 5.685 6.598 MuHd_095 : 33.829 22.425 9.109 7.667 MuHd_100 : 26.657 21.923 7.684 6.999 MuHd_105 : 19.398 16.242 6.798 4.759 Hmax_075 : 1.700 18.667 -2.976 2.440 Hmax_095 : 8.600 10.700 -1.814 4.520 Hmax_100 : 7.800 10.700 -1.356 4.520 Hmax_105 : 7.200 2.700 0.437 4.480 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1396 0.8604 DFMC : 0.3163 0.6837 This protein is probably imported in mitochondria. f(Ser) = 0.0333 f(Arg) = 0.0667 CMi = 0.20408 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 323 PVX_079875 MRKFLPALPKRNSNFHTHVLTPKINKIKVPERSSFKPTLQDGKYQITPMQSVPGHIARPPYAETGLVKHSNVDYEIKDEE 80 SIAKMKEAAKIAAQCLKLCLENSKAGVTTDEIDKMAFNFYVEKGAYPAGINFHGFPKTVCASPNEVVCHGIPNLRKLKDG 160 DIITYDCTVYIDGVFGDCAGTTGIGTISKSHQKLVDVSKECLYKAISVCKHGQKFSEIGRVITEHATRNGFNVIQEFCGH 240 FIGRNMHMYPLIEHHYPNGHPDDEYMQVGQIFTIEPILSEGSRKIHTWKDQWTVCTNDNAFCSQWEHTILVQQNGAEILT 320 QCD 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_079875 2 -----MR|KF 0.091 . PVX_079875 3 ----MRK|FL 0.093 . PVX_079875 10 FLPALPK|RN 0.066 . PVX_079875 11 LPALPKR|NS 0.186 . PVX_079875 23 THVLTPK|IN 0.066 . PVX_079875 26 LTPKINK|IK 0.059 . PVX_079875 28 PKINKIK|VP 0.063 . PVX_079875 32 KIKVPER|SS 0.131 . PVX_079875 36 PERSSFK|PT 0.066 . PVX_079875 43 PTLQDGK|YQ 0.059 . PVX_079875 58 VPGHIAR|PP 0.113 . PVX_079875 68 AETGLVK|HS 0.059 . PVX_079875 77 NVDYEIK|DE 0.071 . PVX_079875 84 DEESIAK|MK 0.071 . PVX_079875 86 ESIAKMK|EA 0.078 . PVX_079875 90 KMKEAAK|IA 0.074 . PVX_079875 97 IAAQCLK|LC 0.057 . PVX_079875 104 LCLENSK|AG 0.055 . PVX_079875 114 TTDEIDK|MA 0.061 . PVX_079875 123 FNFYVEK|GA 0.081 . PVX_079875 137 NFHGFPK|TV 0.098 . PVX_079875 155 HGIPNLR|KL 0.083 . PVX_079875 156 GIPNLRK|LK 0.077 . PVX_079875 158 PNLRKLK|DG 0.146 . PVX_079875 189 GIGTISK|SH 0.075 . PVX_079875 193 ISKSHQK|LV 0.082 . PVX_079875 199 KLVDVSK|EC 0.060 . PVX_079875 204 SKECLYK|AI 0.081 . PVX_079875 210 KAISVCK|HG 0.062 . PVX_079875 214 VCKHGQK|FS 0.073 . PVX_079875 220 KFSEIGR|VI 0.088 . PVX_079875 228 ITEHATR|NG 0.089 . PVX_079875 244 CGHFIGR|NM 0.099 . PVX_079875 283 ILSEGSR|KI 0.118 . PVX_079875 284 LSEGSRK|IH 0.087 . PVX_079875 289 RKIHTWK|DQ 0.083 . ____________________________^_________________

  • Fasta :-

    >PVX_079875 ATGCGTAAATTTTTACCTGCCCTACCAAAGAGGAATTCCAACTTCCATACCCATGTCTTA ACTCCAAAAATAAACAAAATTAAGGTTCCGGAGAGGAGCTCCTTCAAGCCGACGCTCCAG GATGGCAAATACCAAATAACGCCGATGCAAAGCGTCCCAGGGCACATCGCCCGACCCCCC TACGCCGAAACTGGCTTAGTCAAACATTCAAATGTTGATTACGAAATTAAGGATGAAGAA AGCATCGCCAAAATGAAGGAGGCTGCGAAAATTGCAGCCCAGTGTTTGAAGCTTTGTTTG GAAAATTCAAAGGCAGGGGTAACAACAGACGAAATAGACAAAATGGCCTTCAATTTTTAC GTAGAAAAGGGTGCCTACCCGGCTGGCATCAATTTCCACGGCTTTCCCAAAACGGTTTGC GCCTCTCCGAACGAAGTGGTCTGCCACGGAATCCCCAACTTGAGGAAACTAAAAGACGGC GACATCATAACGTACGACTGCACTGTCTACATCGATGGGGTGTTCGGAGACTGCGCAGGG ACCACAGGCATAGGCACAATTTCGAAGAGCCACCAGAAGCTAGTTGACGTCAGCAAGGAA TGCCTTTACAAAGCCATTTCTGTGTGTAAACATGGCCAGAAATTCTCCGAAATTGGACGA GTCATAACTGAGCATGCCACGAGAAATGGGTTTAATGTGATACAAGAATTCTGTGGACAT TTCATTGGCCGAAATATGCACATGTACCCTTTGATTGAACACCATTATCCGAATGGCCAC CCCGACGATGAGTACATGCAAGTGGGGCAGATATTCACCATCGAGCCAATCCTATCGGAG GGAAGTAGAAAAATCCATACGTGGAAGGATCAGTGGACCGTGTGTACCAACGACAACGCG TTTTGCTCGCAGTGGGAGCACACCATTCTGGTGCAGCAAAATGGCGCTGAGATATTGACC CAGTGTGATTAG
  • Download Fasta

  • Fasta :-

    MRKFLPALPKRNSNFHTHVLTPKINKIKVPERSSFKPTLQDGKYQITPMQSVPGHIARPP YAETGLVKHSNVDYEIKDEESIAKMKEAAKIAAQCLKLCLENSKAGVTTDEIDKMAFNFY VEKGAYPAGINFHGFPKTVCASPNEVVCHGIPNLRKLKDGDIITYDCTVYIDGVFGDCAG TTGIGTISKSHQKLVDVSKECLYKAISVCKHGQKFSEIGRVITEHATRNGFNVIQEFCGH FIGRNMHMYPLIEHHYPNGHPDDEYMQVGQIFTIEPILSEGSRKIHTWKDQWTVCTNDNA FCSQWEHTILVQQNGAEILTQCD

  • title: active site
  • coordinates: H149,D166,D177,H240,E275,E306
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PVX_07987534 SPERSSFKPT0.994unspPVX_079875265 YPDDEYMQVG0.99unsp
PVX_079875      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India