PVX_080330 | proteasome subunit beta type-1, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_080330OTHER0.9999490.0000440.000007
No Results

  • Fasta :-

    >PVX_080330 MEILPLSDCSGEKKQEEREAVVEHGRGFKRWNPYVDNGGTVIGVTGKDYVILAADTRLSL SYSIYTRHCPKISKLTDKCIIGSSGMQSDIKTLHSLLKKKIELFVLEHAHYPDIHVIARL LCVILYSRRFFPYYTFNLLAGVSNDSKGVLYNYDAIGSYCEATHSCVGSGSALILPILDN RMEQKNQLIKNLNFNLRDDLDFVKDAITSATERDIYTGDSTEIYIIDQMGVNTTSLELKQ D
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_080330.fa Sequence name : PVX_080330 Sequence length : 241 VALUES OF COMPUTED PARAMETERS Coef20 : 3.056 CoefTot : 0.000 ChDiff : -4 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.424 1.300 0.242 0.519 MesoH : -0.217 0.534 -0.198 0.281 MuHd_075 : 33.465 8.678 7.452 4.207 MuHd_095 : 11.216 3.987 2.916 2.140 MuHd_100 : 6.511 4.723 1.498 0.444 MuHd_105 : 13.209 10.107 3.493 2.499 Hmax_075 : 4.083 -0.700 -1.709 1.528 Hmax_095 : -14.000 -3.400 -4.924 0.310 Hmax_100 : -13.000 -0.900 -4.229 -0.150 Hmax_105 : -8.900 -0.117 -3.922 0.380 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9615 0.0385 DFMC : 0.9325 0.0675
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 241 PVX_080330 MEILPLSDCSGEKKQEEREAVVEHGRGFKRWNPYVDNGGTVIGVTGKDYVILAADTRLSLSYSIYTRHCPKISKLTDKCI 80 IGSSGMQSDIKTLHSLLKKKIELFVLEHAHYPDIHVIARLLCVILYSRRFFPYYTFNLLAGVSNDSKGVLYNYDAIGSYC 160 EATHSCVGSGSALILPILDNRMEQKNQLIKNLNFNLRDDLDFVKDAITSATERDIYTGDSTEIYIIDQMGVNTTSLELKQ 240 D 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 . 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_080330 13 SDCSGEK|KQ 0.065 . PVX_080330 14 DCSGEKK|QE 0.106 . PVX_080330 18 EKKQEER|EA 0.093 . PVX_080330 26 AVVEHGR|GF 0.089 . PVX_080330 29 EHGRGFK|RW 0.115 . PVX_080330 30 HGRGFKR|WN 0.187 . PVX_080330 47 VIGVTGK|DY 0.067 . PVX_080330 57 ILAADTR|LS 0.066 . PVX_080330 67 SYSIYTR|HC 0.089 . PVX_080330 71 YTRHCPK|IS 0.060 . PVX_080330 74 HCPKISK|LT 0.065 . PVX_080330 78 ISKLTDK|CI 0.077 . PVX_080330 91 GMQSDIK|TL 0.065 . PVX_080330 98 TLHSLLK|KK 0.065 . PVX_080330 99 LHSLLKK|KI 0.100 . PVX_080330 100 HSLLKKK|IE 0.096 . PVX_080330 119 DIHVIAR|LL 0.113 . PVX_080330 128 CVILYSR|RF 0.064 . PVX_080330 129 VILYSRR|FF 0.106 . PVX_080330 147 GVSNDSK|GV 0.077 . PVX_080330 181 LPILDNR|ME 0.078 . PVX_080330 185 DNRMEQK|NQ 0.062 . PVX_080330 190 QKNQLIK|NL 0.067 . PVX_080330 197 NLNFNLR|DD 0.107 . PVX_080330 204 DDLDFVK|DA 0.074 . PVX_080330 213 ITSATER|DI 0.175 . PVX_080330 239 TTSLELK|QD 0.074 . ____________________________^_________________

  • Fasta :-

    >PVX_080330 ATGCATACAGAGGGGTACATTTACGTATGTATATGTCCCCCTTTGGCAACTTTCCACTTG CACGTGCACTTCCACTTGCACTTCCTCTTTTTTTCCCCGACCGTGGTGCGAGATGATTCC CCTTTTGATGTTATTCGTTGGTGGGAGTTGACCCATCTTGTGTAGTGTCTCCCCAATTTG ATGTCCAACGGGGTGGGTCAAATGGAGGGGAAAAAAAAAAATAAAAAACGCATCACAGTT ATACTAACCAATTGCACAGCGCGTGTGAGCACCCAGACCGATTCGTCTTCCCCCCCGAAA TGCATACATGGCGAAAGGGGGTCTCCTCTTCATGGGGGAGAGATACAATGGTACCAGAAC TTACCCATGTGGGGAAGTACCCCTTTTGCGCCTACCGCTCGTTCGCGCTGACCCTTTAAA TCATCTCCGCGTGGGCAAAGAAAACGGGTGTAGCGTTATACAGGCCAAGTTCAACCCACG TGGGAGGGCATCGTAGCGGGTAAAGGCGATCGTCCCGACTGAGCGCACGTCATATGTGTA CAACGGGCGATTGTAAAACTGTGCGCAGTGGGGGTATCCACTTTGGTTTAAAAAAAAAAA AAAAAAATTACCACCCTAGCTGAGAGTAGCTTCCAAGCAGTTCACCGCACGGAGAAAAAA AGGCTCACCAAAGAGGGACCACAGAAGAGGAGCCCCAAAAGAGGAACCACTGAAGAGGAG CCCCAAAAGAGGAACCACTGAAGAGGAGCCCCAAAAGAGGTGTTTTCTTTTTTTGGCAAA CGAAAACCCCATTGCGGCGGCTCACCGTTTCGCCCATTCGCATGTGCGCGAGGAGTGCCC GCAAGTCAGCCGCCAAGCAGATAGCCCCTTCTTCTCCTGCAAGCACCCCCAACCGCCAAG ATGGAAATCCTGCCGCTAAGTGACTGCTCAGGGGAGAAGAAGCAAGAGGAGAGGGAAGCC GTAGTGGAACATGGCCGCGGGTTCAAGAGGTGGAACCCGTACGTTGACAATGGAGGAACC GTCATCGGAGTGACCGGCAAGGACTACGTCATCCTGGCCGCGGACACGAGGCTGTCCCTG TCCTACTCAATTTACACCAGGCATTGCCCCAAAATATCAAAGCTAACGGATAAGTGCATT ATCGGCTCCTCCGGGATGCAGTCCGACATTAAGACGTTACACTCGTTGTTGAAGAAAAAA ATTGAACTGTTCGTGCTGGAGCACGCGCACTACCCGGACATCCACGTCATAGCGAGGCTG CTCTGCGTGATCCTCTACAGCAGGAGGTTTTTCCCCTACTATACGTTTAACCTGCTGGCT GGAGTGAGCAACGACAGTAAGGGAGTCCTCTACAATTACGATGCTATTGGGTCTTATTGT GAAGCGACTCACTCCTGCGTTGGAAGCGGGTCGGCACTCATCCTCCCCATATTAGATAAC CGAATGGAACAGAAGAACCAGCTGATCAAAAACTTAAATTTCAACCTGAGGGACGATCTC GATTTTGTGAAAGACGCGATTACGTCGGCCACGGAGAGGGACATATACACTGGGGATTCA ACGGAGATTTATATTATCGACCAGATGGGCGTCAACACCACCTCGCTGGAGCTGAAGCAG GACTAG
  • Download Fasta

  • Fasta :-

    MEILPLSDCSGEKKQEEREAVVEHGRGFKRWNPYVDNGGTVIGVTGKDYVILAADTRLSL SYSIYTRHCPKISKLTDKCIIGSSGMQSDIKTLHSLLKKKIELFVLEHAHYPDIHVIARL LCVILYSRRFFPYYTFNLLAGVSNDSKGVLYNYDAIGSYCEATHSCVGSGSALILPILDN RMEQKNQLIKNLNFNLRDDLDFVKDAITSATERDIYTGDSTEIYIIDQMGVNTTSLELKQ D

  • title: active site
  • coordinates: G39,D55,R57,K71,S169,D214,T217,G218
No Results
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PVX_080330      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India