PVX_081375 | proteasome subunit beta type-3, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_081375OTHER0.9161010.0719020.011997
No Results

  • Fasta :-

    >PVX_081375 MGSIFNYNGGCVLGMSGAQCVAIACDLRLGANNFTTVSTNFTKIFKMNDYVYVGLSGLAT DIQTLYELLRYRVNLYEIRQETPMDIDCFANMLSSILYANRFSPYFVNPIVVGFRVQHTL DDEGKKVCSFEPYLTAYDLIGAKCETKDFVVNGVTSEQLYGMCESLYIKDQDKDGLFETI SQCLLSALDRDCLSGWGAEVYVLTPDTIMKKKLKARMD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_081375.fa Sequence name : PVX_081375 Sequence length : 218 VALUES OF COMPUTED PARAMETERS Coef20 : 3.397 CoefTot : -1.679 ChDiff : -6 ZoneTo : 48 KR : 3 DE : 1 CleavSite : 30 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.518 1.571 0.476 0.527 MesoH : -0.276 0.392 -0.246 0.231 MuHd_075 : 26.808 11.737 7.656 6.009 MuHd_095 : 36.508 22.546 9.508 9.114 MuHd_100 : 33.685 23.746 9.763 8.992 MuHd_105 : 35.662 26.979 10.966 9.085 Hmax_075 : 10.412 8.633 5.460 3.938 Hmax_095 : 16.500 14.875 1.960 6.038 Hmax_100 : 18.400 16.900 3.014 6.400 Hmax_105 : 19.133 18.100 3.121 6.540 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8130 0.1870 DFMC : 0.8268 0.1732
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 218 PVX_081375 MGSIFNYNGGCVLGMSGAQCVAIACDLRLGANNFTTVSTNFTKIFKMNDYVYVGLSGLATDIQTLYELLRYRVNLYEIRQ 80 ETPMDIDCFANMLSSILYANRFSPYFVNPIVVGFRVQHTLDDEGKKVCSFEPYLTAYDLIGAKCETKDFVVNGVTSEQLY 160 GMCESLYIKDQDKDGLFETISQCLLSALDRDCLSGWGAEVYVLTPDTIMKKKLKARMD 240 ................................................................................ 80 ................................................................................ 160 .......................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_081375 28 AIACDLR|LG 0.072 . PVX_081375 43 VSTNFTK|IF 0.059 . PVX_081375 46 NFTKIFK|MN 0.062 . PVX_081375 70 TLYELLR|YR 0.073 . PVX_081375 72 YELLRYR|VN 0.072 . PVX_081375 79 VNLYEIR|QE 0.073 . PVX_081375 101 SILYANR|FS 0.074 . PVX_081375 115 PIVVGFR|VQ 0.074 . PVX_081375 125 TLDDEGK|KV 0.083 . PVX_081375 126 LDDEGKK|VC 0.078 . PVX_081375 143 YDLIGAK|CE 0.054 . PVX_081375 147 GAKCETK|DF 0.072 . PVX_081375 169 CESLYIK|DQ 0.071 . PVX_081375 173 YIKDQDK|DG 0.061 . PVX_081375 190 LLSALDR|DC 0.119 . PVX_081375 210 TPDTIMK|KK 0.067 . PVX_081375 211 PDTIMKK|KL 0.081 . PVX_081375 212 DTIMKKK|LK 0.086 . PVX_081375 214 IMKKKLK|AR 0.071 . PVX_081375 216 KKKLKAR|MD 0.128 . ____________________________^_________________

  • Fasta :-

    >PVX_081375 ACTCCAACTGGTAAGCAACCCACGAGCAGTAATCGCAATCTAGTGAACTGCTGACCTTCC AACTTGGCGAAGCAAAACCACCAGTGCCTCACCAACCTTGACGAACAGAAAGGATAGCGA AAGTAACCACCACGCGCGACGAACAAGCCCAAGGTGTTACGTGCGCAGCGGCTGCCTCTC CCCCCTCCCATCACGCAGAGGAAGCAGAGAGCGGGAGTGCAACCTCCACACGATACTGCT TAGAGGAGAAGCCGTCAGCACTGCCTCGCCTCGCCCAGCATCCCCAGTAGTGGCCAGCGA ACGGGAAAAAGGATTCCCCGTGAACCCAAGCACGCTGCGCCAAGCACACCAGAGAGCAAC TCCGCACACACTACCCAGGAATCCTCCAAAATGGGCTCCATCTTCAACTACAACGGGGGG TGCGTGCTCGGAATGAGCGGCGCGCAGTGCGTGGCCATCGCGTGCGACCTGAGGCTGGGC GCAAACAACTTCACCACAGTCAGCACCAATTTCACGAAGATATTTAAAATGAACGACTAT GTGTATGTGGGCCTCAGCGGATTGGCAACAGACATACAGACGCTCTATGAGTTGCTACGG TACCGAGTCAACCTCTACGAAATTAGGCAAGAGACCCCGATGGACATTGATTGCTTCGCA AATATGCTGTCTAGCATTTTATATGCCAATCGCTTTTCCCCCTACTTTGTTAACCCTATT GTGGTTGGGTTCCGGGTTCAGCACACCCTGGACGATGAGGGGAAGAAGGTGTGTTCCTTT GAGCCCTACCTCACTGCGTACGACTTGATTGGCGCCAAGTGCGAGACGAAGGATTTCGTC GTGAACGGGGTCACCAGCGAGCAGCTCTACGGGATGTGCGAGTCGCTCTACATAAAGGAC CAGGATAAAGACGGCCTCTTCGAAACCATCTCCCAGTGCCTGCTGAGCGCCCTCGACAGG GACTGCCTATCCGGATGGGGAGCCGAAGTTTACGTTCTGACGCCCGATACCATCATGAAG AAGAAACTGAAAGCACGAATGGACTGA
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  • Fasta :-

    MGSIFNYNGGCVLGMSGAQCVAIACDLRLGANNFTTVSTNFTKIFKMNDYVYVGLSGLAT DIQTLYELLRYRVNLYEIRQETPMDIDCFANMLSSILYANRFSPYFVNPIVVGFRVQHTL DDEGKKVCSFEPYLTAYDLIGAKCETKDFVVNGVTSEQLYGMCESLYIKDQDKDGLFETI SQCLLSALDRDCLSGWGAEVYVLTPDTIMKKKLKARMD

  • title: active site
  • coordinates: G10,D26,R28,K43,V154,D191,S194,G195
No Results
No Results
No Results
PVX_081375      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India