PVX_085945 | hypothetical protein, conserved

_IDPredictionOTHERSPmTPCS_Position
PVX_085945OTHER0.9983620.0001000.001538
No Results

  • Fasta :-

    >PVX_085945 MISSSKIAYEYVSCTKGRTFIVYSKNLPSNESRTYSSSSCSLLRDTNSASNHEKAVVLLL HGLNGGTHQYEKLMNFLVHVNHAFISLDFYGHGNSVLSQNLNKFTERLYTEQIYDVLRNK HILDATFIIVAFSMGCIIATHLSAENKIHIKKLCLISAAGLAKPRHRFLIFLLKHNIRIC LRLAKKYSHSMISEDTVKNEYYNFENNVEDAMKRYSVLRENHEKFIETFLKVLTGIKIQD SKKHYAALLKTNVDILFIYGKEDKLTPYSYTVKFLEKKKKYVQNVKMIILPECCHLVIHE KYGELVQHLLYFLQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_085945.fa Sequence name : PVX_085945 Sequence length : 314 VALUES OF COMPUTED PARAMETERS Coef20 : 4.320 CoefTot : 0.052 ChDiff : 14 ZoneTo : 44 KR : 6 DE : 2 CleavSite : 36 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.047 2.276 0.423 0.772 MesoH : -0.508 0.684 -0.353 0.240 MuHd_075 : 17.096 16.307 7.490 4.621 MuHd_095 : 30.076 11.837 6.998 7.048 MuHd_100 : 25.921 10.455 5.796 6.650 MuHd_105 : 20.814 13.136 6.693 4.912 Hmax_075 : -3.762 12.600 -0.509 4.503 Hmax_095 : 0.600 3.762 -1.573 1.880 Hmax_100 : 2.800 4.800 -0.831 3.380 Hmax_105 : 9.333 12.133 2.208 3.803 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8752 0.1248 DFMC : 0.8209 0.1791
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 314 PVX_085945 MISSSKIAYEYVSCTKGRTFIVYSKNLPSNESRTYSSSSCSLLRDTNSASNHEKAVVLLLHGLNGGTHQYEKLMNFLVHV 80 NHAFISLDFYGHGNSVLSQNLNKFTERLYTEQIYDVLRNKHILDATFIIVAFSMGCIIATHLSAENKIHIKKLCLISAAG 160 LAKPRHRFLIFLLKHNIRICLRLAKKYSHSMISEDTVKNEYYNFENNVEDAMKRYSVLRENHEKFIETFLKVLTGIKIQD 240 SKKHYAALLKTNVDILFIYGKEDKLTPYSYTVKFLEKKKKYVQNVKMIILPECCHLVIHEKYGELVQHLLYFLQ 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .......................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_085945 6 -MISSSK|IA 0.064 . PVX_085945 16 EYVSCTK|GR 0.058 . PVX_085945 18 VSCTKGR|TF 0.100 . PVX_085945 25 TFIVYSK|NL 0.059 . PVX_085945 33 LPSNESR|TY 0.115 . PVX_085945 44 SSCSLLR|DT 0.112 . PVX_085945 54 SASNHEK|AV 0.108 . PVX_085945 72 GTHQYEK|LM 0.057 . PVX_085945 103 LSQNLNK|FT 0.076 . PVX_085945 107 LNKFTER|LY 0.093 . PVX_085945 118 QIYDVLR|NK 0.085 . PVX_085945 120 YDVLRNK|HI 0.067 . PVX_085945 147 HLSAENK|IH 0.075 . PVX_085945 151 ENKIHIK|KL 0.062 . PVX_085945 152 NKIHIKK|LC 0.086 . PVX_085945 163 SAAGLAK|PR 0.068 . PVX_085945 165 AGLAKPR|HR 0.079 . PVX_085945 167 LAKPRHR|FL 0.115 . PVX_085945 174 FLIFLLK|HN 0.059 . PVX_085945 178 LLKHNIR|IC 0.070 . PVX_085945 182 NIRICLR|LA 0.093 . PVX_085945 185 ICLRLAK|KY 0.136 . PVX_085945 186 CLRLAKK|YS 0.101 . PVX_085945 198 ISEDTVK|NE 0.057 . PVX_085945 213 NVEDAMK|RY 0.065 . PVX_085945 214 VEDAMKR|YS 0.144 . PVX_085945 219 KRYSVLR|EN 0.119 . PVX_085945 224 LRENHEK|FI 0.105 . PVX_085945 231 FIETFLK|VL 0.063 . PVX_085945 237 KVLTGIK|IQ 0.055 . PVX_085945 242 IKIQDSK|KH 0.063 . PVX_085945 243 KIQDSKK|HY 0.122 . PVX_085945 250 HYAALLK|TN 0.064 . PVX_085945 261 ILFIYGK|ED 0.055 . PVX_085945 264 IYGKEDK|LT 0.058 . PVX_085945 273 PYSYTVK|FL 0.082 . PVX_085945 277 TVKFLEK|KK 0.062 . PVX_085945 278 VKFLEKK|KK 0.087 . PVX_085945 279 KFLEKKK|KY 0.097 . PVX_085945 280 FLEKKKK|YV 0.209 . PVX_085945 286 KYVQNVK|MI 0.062 . PVX_085945 301 HLVIHEK|YG 0.074 . ____________________________^_________________

  • Fasta :-

    >PVX_085945 ATGATTTCGTCAAGCAAAATCGCATACGAATATGTCAGTTGCACGAAGGGGCGCACCTTT ATAGTGTACTCAAAGAACTTACCATCGAATGAAAGCAGGACATATAGCAGCTCCTCGTGC TCTTTACTCCGAGATACCAATTCCGCCAGCAACCATGAAAAGGCAGTTGTGCTTCTCCTG CACGGGTTAAATGGGGGCACTCACCAGTACGAGAAGTTGATGAATTTTTTGGTTCACGTC AACCACGCGTTTATATCGCTAGACTTCTACGGCCACGGAAATAGCGTCCTTTCGCAGAAC CTGAACAAATTTACGGAGCGATTATACACAGAACAAATTTATGACGTTTTAAGGAATAAA CATATTTTAGATGCAACCTTCATTATTGTCGCCTTTTCCATGGGGTGTATCATAGCTACA CACCTATCTGCTGAGAATAAAATACACATAAAGAAACTCTGCTTAATCAGTGCAGCTGGG CTGGCCAAGCCGCGGCACCGATTCTTAATCTTCCTGCTAAAGCACAACATACGCATTTGC CTGAGACTGGCGAAGAAGTACAGCCATTCGATGATCTCCGAGGACACGGTAAAGAATGAA TATTACAACTTCGAAAATAACGTAGAAGATGCGATGAAGCGGTACTCAGTACTCCGAGAA AATCATGAAAAATTCATTGAGACATTTCTAAAGGTACTGACGGGAATAAAAATCCAAGAT TCGAAGAAGCACTACGCTGCTTTGTTAAAAACTAACGTGGACATCCTTTTCATCTACGGA AAGGAAGATAAACTGACTCCCTACTCTTACACCGTAAAATTTTTGGAAAAAAAAAAGAAA TATGTGCAGAATGTGAAGATGATTATTTTACCCGAATGTTGTCACCTCGTTATACATGAG AAGTACGGCGAGTTGGTTCAGCACCTGCTCTACTTTTTGCAGTGA
  • Download Fasta

  • Fasta :-

    MISSSKIAYEYVSCTKGRTFIVYSKNLPSNESRTYSSSSCSLLRDTNSASNHEKAVVLLL HGLNGGTHQYEKLMNFLVHVNHAFISLDFYGHGNSVLSQNLNKFTERLYTEQIYDVLRNK HILDATFIIVAFSMGCIIATHLSAENKIHIKKLCLISAAGLAKPRHRFLIFLLKHNIRIC LRLAKKYSHSMISEDTVKNEYYNFENNVEDAMKRYSVLRENHEKFIETFLKVLTGIKIQD SKKHYAALLKTNVDILFIYGKEDKLTPYSYTVKFLEKKKKYVQNVKMIILPECCHLVIHE KYGELVQHLLYFLQ

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PVX_085945      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India