PVX_087035 | mitochondrial-processing peptidase subunit beta, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_087035mTP0.3711690.0001760.628655CS pos: 9-10. RRY-GS. Pr: 0.4121
No Results

  • Fasta :-

    >PVX_087035 MLGRALRRYGSLKGLPQEVLNQPGTRVSELPNKLKIATVKSSCEVPTIGIWVSSGSKYES KQNNGVAHFLEHMIFKGTKKRSRIQLEKEIENMGAHLNAYTAREQTSYYCRCFKGDVKWC IELLSDILSNSIFDEDLIEMEKHVILREMEEVEKSKDEVIFDKLHMTAFRDHALGYTILG PIENIKNMNRQSIINYIHTNYTSDRMVLCAVGDVEHEEIVKLAEQHFSHLKPQSSHTTSA SNLDAVKPYFCGSEIIVRDDDSGPSAHVAVAFEGVDWKSPDSITFMLMQCIIGTYKKSEE GILPGKLSANRTVNNICNKMTVGCADYFSAFNTCYNNTGLFGFYVQCDELAVEHALGELM FGVTSLSYSITDEEVELAKIQLKTQLINMFESSSTLAEEVSRQILVYGRNIPLAEFLLRL DKIDTEEVKRVAWKYLHDREIAVAAMGALHGMPQYYDLRQKTFWLRY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_087035.fa Sequence name : PVX_087035 Sequence length : 467 VALUES OF COMPUTED PARAMETERS Coef20 : 3.914 CoefTot : -0.282 ChDiff : -10 ZoneTo : 17 KR : 4 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.182 1.141 0.080 0.502 MesoH : -0.320 0.312 -0.294 0.242 MuHd_075 : 49.272 25.316 12.120 9.489 MuHd_095 : 18.056 6.184 2.134 4.894 MuHd_100 : 26.948 15.054 5.200 6.247 MuHd_105 : 32.384 21.285 7.625 8.038 Hmax_075 : 14.700 12.250 2.297 5.157 Hmax_095 : -1.750 1.925 -2.943 1.619 Hmax_100 : 0.900 6.400 -1.697 2.800 Hmax_105 : 10.617 12.017 1.516 5.017 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2925 0.7075 DFMC : 0.2800 0.7200 This protein is probably imported in mitochondria. f(Ser) = 0.0588 f(Arg) = 0.1765 CMi = 0.18553 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 467 PVX_087035 MLGRALRRYGSLKGLPQEVLNQPGTRVSELPNKLKIATVKSSCEVPTIGIWVSSGSKYESKQNNGVAHFLEHMIFKGTKK 80 RSRIQLEKEIENMGAHLNAYTAREQTSYYCRCFKGDVKWCIELLSDILSNSIFDEDLIEMEKHVILREMEEVEKSKDEVI 160 FDKLHMTAFRDHALGYTILGPIENIKNMNRQSIINYIHTNYTSDRMVLCAVGDVEHEEIVKLAEQHFSHLKPQSSHTTSA 240 SNLDAVKPYFCGSEIIVRDDDSGPSAHVAVAFEGVDWKSPDSITFMLMQCIIGTYKKSEEGILPGKLSANRTVNNICNKM 320 TVGCADYFSAFNTCYNNTGLFGFYVQCDELAVEHALGELMFGVTSLSYSITDEEVELAKIQLKTQLINMFESSSTLAEEV 400 SRQILVYGRNIPLAEFLLRLDKIDTEEVKRVAWKYLHDREIAVAAMGALHGMPQYYDLRQKTFWLRY 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_087035 4 ---MLGR|AL 0.094 . PVX_087035 7 MLGRALR|RY 0.189 . PVX_087035 8 LGRALRR|YG 0.135 . PVX_087035 13 RRYGSLK|GL 0.081 . PVX_087035 26 LNQPGTR|VS 0.074 . PVX_087035 33 VSELPNK|LK 0.061 . PVX_087035 35 ELPNKLK|IA 0.067 . PVX_087035 40 LKIATVK|SS 0.095 . PVX_087035 57 WVSSGSK|YE 0.069 . PVX_087035 61 GSKYESK|QN 0.075 . PVX_087035 76 LEHMIFK|GT 0.071 . PVX_087035 79 MIFKGTK|KR 0.066 . PVX_087035 80 IFKGTKK|RS 0.095 . PVX_087035 81 FKGTKKR|SR 0.415 . PVX_087035 83 GTKKRSR|IQ 0.086 . PVX_087035 88 SRIQLEK|EI 0.082 . PVX_087035 103 LNAYTAR|EQ 0.102 . PVX_087035 111 QTSYYCR|CF 0.102 . PVX_087035 114 YYCRCFK|GD 0.097 . PVX_087035 118 CFKGDVK|WC 0.059 . PVX_087035 142 DLIEMEK|HV 0.066 . PVX_087035 147 EKHVILR|EM 0.147 . PVX_087035 154 EMEEVEK|SK 0.080 . PVX_087035 156 EEVEKSK|DE 0.064 . PVX_087035 163 DEVIFDK|LH 0.067 . PVX_087035 170 LHMTAFR|DH 0.100 . PVX_087035 186 GPIENIK|NM 0.059 . PVX_087035 190 NIKNMNR|QS 0.083 . PVX_087035 205 TNYTSDR|MV 0.165 . PVX_087035 221 EHEEIVK|LA 0.070 . PVX_087035 231 QHFSHLK|PQ 0.065 . PVX_087035 247 SNLDAVK|PY 0.061 . PVX_087035 258 GSEIIVR|DD 0.111 . PVX_087035 278 FEGVDWK|SP 0.087 . PVX_087035 296 CIIGTYK|KS 0.062 . PVX_087035 297 IIGTYKK|SE 0.207 . PVX_087035 306 EGILPGK|LS 0.054 . PVX_087035 311 GKLSANR|TV 0.095 . PVX_087035 319 VNNICNK|MT 0.070 . PVX_087035 379 EEVELAK|IQ 0.055 . PVX_087035 383 LAKIQLK|TQ 0.060 . PVX_087035 402 LAEEVSR|QI 0.095 . PVX_087035 409 QILVYGR|NI 0.079 . PVX_087035 419 LAEFLLR|LD 0.073 . PVX_087035 422 FLLRLDK|ID 0.088 . PVX_087035 429 IDTEEVK|RV 0.064 . PVX_087035 430 DTEEVKR|VA 0.196 . PVX_087035 434 VKRVAWK|YL 0.093 . PVX_087035 439 WKYLHDR|EI 0.107 . PVX_087035 459 PQYYDLR|QK 0.075 . PVX_087035 461 YYDLRQK|TF 0.054 . PVX_087035 466 QKTFWLR|Y- 0.092 . ____________________________^_________________

  • Fasta :-

    >PVX_087035 ATGCTGGGGCGCGCGCTGCGGAGGTACGGCTCGCTGAAGGGCCTGCCCCAGGAAGTGCTG AACCAGCCTGGCACGCGCGTGAGCGAGCTGCCCAACAAGCTGAAGATCGCCACGGTGAAA AGCTCGTGCGAAGTGCCCACCATAGGAATCTGGGTGAGCAGTGGCAGCAAATATGAAAGC AAACAGAACAATGGAGTAGCTCACTTCCTAGAGCACATGATATTTAAAGGGACCAAAAAG AGAAGCCGCATCCAGCTAGAGAAAGAAATAGAAAACATGGGAGCGCACCTTAACGCATAT ACAGCAAGAGAACAGACGAGCTACTACTGTCGCTGCTTCAAAGGAGATGTAAAGTGGTGC ATAGAACTCCTAAGTGACATCCTATCTAACAGTATCTTCGATGAAGATCTAATCGAAATG GAAAAGCATGTGATTCTTAGAGAAATGGAAGAAGTGGAGAAGTCAAAAGATGAGGTCATT TTTGACAAGCTCCATATGACCGCATTTCGGGATCATGCTCTAGGATACACAATTTTAGGA CCCATAGAAAATATAAAGAATATGAACAGACAGAGCATCATTAATTACATCCACACGAAT TACACCTCCGATAGGATGGTCCTCTGTGCCGTGGGGGACGTGGAGCACGAGGAGATTGTC AAGCTGGCTGAGCAGCACTTCAGCCATTTGAAGCCGCAGTCTTCCCACACCACGTCTGCA TCTAACTTAGATGCTGTAAAGCCCTATTTTTGTGGTTCCGAAATTATCGTAAGAGATGAC GATTCGGGACCTAGTGCACACGTAGCTGTGGCGTTCGAAGGAGTGGATTGGAAGTCCCCC GATTCGATCACCTTCATGCTTATGCAGTGCATCATCGGGACTTATAAAAAAAGCGAAGAG GGAATCCTCCCAGGAAAACTCTCCGCAAACAGAACCGTTAACAACATCTGCAATAAAATG ACCGTCGGATGTGCAGACTACTTTTCTGCTTTCAACACTTGTTATAACAACACGGGCCTG TTTGGATTCTACGTCCAGTGTGACGAGCTAGCTGTGGAGCACGCCCTAGGCGAACTCATG TTTGGAGTTACTTCCCTCAGTTACAGCATCACAGATGAAGAAGTGGAGCTAGCCAAAATA CAACTGAAGACCCAACTCATTAATATGTTCGAATCATCGTCCACCCTGGCGGAAGAAGTC TCCAGGCAGATTCTAGTGTACGGACGGAACATCCCTCTGGCGGAGTTCCTCCTTAGGCTG GACAAAATAGACACCGAGGAAGTGAAGCGGGTCGCGTGGAAGTACCTGCACGACCGCGAG ATCGCCGTGGCCGCCATGGGCGCGCTGCACGGCATGCCGCAGTACTACGACCTCCGCCAG AAGACCTTCTGGTTGAGGTATTGA
  • Download Fasta

  • Fasta :-

    MLGRALRRYGSLKGLPQEVLNQPGTRVSELPNKLKIATVKSSCEVPTIGIWVSSGSKYES KQNNGVAHFLEHMIFKGTKKRSRIQLEKEIENMGAHLNAYTAREQTSYYCRCFKGDVKWC IELLSDILSNSIFDEDLIEMEKHVILREMEEVEKSKDEVIFDKLHMTAFRDHALGYTILG PIENIKNMNRQSIINYIHTNYTSDRMVLCAVGDVEHEEIVKLAEQHFSHLKPQSSHTTSA SNLDAVKPYFCGSEIIVRDDDSGPSAHVAVAFEGVDWKSPDSITFMLMQCIIGTYKKSEE GILPGKLSANRTVNNICNKMTVGCADYFSAFNTCYNNTGLFGFYVQCDELAVEHALGELM FGVTSLSYSITDEEVELAKIQLKTQLINMFESSSTLAEEVSRQILVYGRNIPLAEFLLRL DKIDTEEVKRVAWKYLHDREIAVAAMGALHGMPQYYDLRQKTFWLRY

    No Results
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IDSitePeptideScoreMethod
PVX_087035369 SSLSYSITDE0.997unsp
PVX_087035      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India