PVX_087115 | proteasome subunit beta type-6, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_087115OTHER0.9998270.0001240.000049
No Results

  • Fasta :-

    >PVX_087115 MQVERMEADFMGAPLREDPYNIKTPISDGTTIIGIIYEHGVMLACDTRTSSGTLVSNKCS RKINRINENIYACRSGASAHSQKVIELIKHFCLSMKCENRKKGRFHEDEVITDDLANEED IDLSAINNPFGLAQNMDPNYVTKHKYFYEDKFMDFNPLVENVAHMTKKLLYANNHFLSCG LILGGYDKEKKQQLYSVNLNGSIVQRFDYAVSGSGSVYIQSYLQDKYKKNMSKKECFELI LGCVKYAMYNDNSSGGIVRIVNMTKLFVEEFTVTNTQLHFDY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_087115.fa Sequence name : PVX_087115 Sequence length : 282 VALUES OF COMPUTED PARAMETERS Coef20 : 3.216 CoefTot : -0.155 ChDiff : -2 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.076 1.271 0.161 0.577 MesoH : -0.988 0.011 -0.432 0.116 MuHd_075 : 16.544 7.169 2.885 0.289 MuHd_095 : 22.681 12.646 5.045 5.858 MuHd_100 : 15.885 8.685 2.871 5.286 MuHd_105 : 9.694 4.901 1.276 3.891 Hmax_075 : 5.133 9.100 -1.506 2.007 Hmax_095 : -1.487 5.250 -2.759 2.765 Hmax_100 : -1.200 2.100 -3.156 2.200 Hmax_105 : -5.300 4.317 -3.784 2.427 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9831 0.0169 DFMC : 0.9796 0.0204
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 282 PVX_087115 MQVERMEADFMGAPLREDPYNIKTPISDGTTIIGIIYEHGVMLACDTRTSSGTLVSNKCSRKINRINENIYACRSGASAH 80 SQKVIELIKHFCLSMKCENRKKGRFHEDEVITDDLANEEDIDLSAINNPFGLAQNMDPNYVTKHKYFYEDKFMDFNPLVE 160 NVAHMTKKLLYANNHFLSCGLILGGYDKEKKQQLYSVNLNGSIVQRFDYAVSGSGSVYIQSYLQDKYKKNMSKKECFELI 240 LGCVKYAMYNDNSSGGIVRIVNMTKLFVEEFTVTNTQLHFDY 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .......................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_087115 5 --MQVER|ME 0.089 . PVX_087115 16 FMGAPLR|ED 0.079 . PVX_087115 23 EDPYNIK|TP 0.058 . PVX_087115 48 MLACDTR|TS 0.095 . PVX_087115 58 GTLVSNK|CS 0.065 . PVX_087115 61 VSNKCSR|KI 0.108 . PVX_087115 62 SNKCSRK|IN 0.104 . PVX_087115 65 CSRKINR|IN 0.115 . PVX_087115 74 ENIYACR|SG 0.107 . PVX_087115 83 ASAHSQK|VI 0.076 . PVX_087115 89 KVIELIK|HF 0.060 . PVX_087115 96 HFCLSMK|CE 0.063 . PVX_087115 100 SMKCENR|KK 0.096 . PVX_087115 101 MKCENRK|KG 0.083 . PVX_087115 102 KCENRKK|GR 0.097 . PVX_087115 104 ENRKKGR|FH 0.181 . PVX_087115 143 DPNYVTK|HK 0.080 . PVX_087115 145 NYVTKHK|YF 0.069 . PVX_087115 151 KYFYEDK|FM 0.062 . PVX_087115 167 NVAHMTK|KL 0.062 . PVX_087115 168 VAHMTKK|LL 0.123 . PVX_087115 188 ILGGYDK|EK 0.066 . PVX_087115 190 GGYDKEK|KQ 0.059 . PVX_087115 191 GYDKEKK|QQ 0.076 . PVX_087115 206 NGSIVQR|FD 0.131 . PVX_087115 226 QSYLQDK|YK 0.064 . PVX_087115 228 YLQDKYK|KN 0.071 . PVX_087115 229 LQDKYKK|NM 0.130 . PVX_087115 233 YKKNMSK|KE 0.062 . PVX_087115 234 KKNMSKK|EC 0.136 . PVX_087115 245 LILGCVK|YA 0.063 . PVX_087115 259 SSGGIVR|IV 0.103 . PVX_087115 265 RIVNMTK|LF 0.063 . ____________________________^_________________

  • Fasta :-

    >PVX_087115 GGCTAACGGTCAGGCATATTTCGTATCACATTGTTGGGTATGCCCACGCGGTAACACGGA TAGAGCTGTGTGACTTTGATGAAAGTTCCTAAGCAACCAATCACCTACCGCAAGGCAGTT GCCATTTTTTTATCATCCTTATGTGAAAGAGGCCAAGCGGCGGAGAGTTCATTTGACGCG CATGTGAGGGGGGTTTGACCTGCCAGGATAAGCCCTTATGCAGTGTGTTAACGTTGTGTA CGTTTTACTGGCCCAGCGCAGCTACGTAGTTCTCCTCATCCCTCGCTCGATCGCGCGTAT ACGCAGCTTGCACGGGTGCACATAAATACGTGCGTGTGTACACCCTTTTGTACACCATTT TGTGTACCATTTTGCCCCCCTTCCACCCAACATGCAAGTCGAACGCATGGAGGCCGATTT CATGGGCGCCCCGCTGAGGGAAGACCCGTACAACATCAAGACGCCCATTTCGGACGGCAC GACCATCATAGGAATCATTTACGAGCATGGAGTCATGCTGGCGTGTGACACCAGGACGTC CTCCGGAACTCTCGTCAGCAACAAGTGCTCCAGAAAGATAAACAGGATTAACGAAAATAT CTATGCCTGTCGCAGTGGAGCCTCTGCACACAGTCAGAAGGTAATCGAACTCATTAAGCA TTTCTGCCTATCGATGAAATGTGAAAATAGAAAGAAAGGAAGGTTTCACGAGGACGAAGT GATTACAGATGACCTCGCGAATGAGGAAGACATCGACCTCAGTGCAATTAACAACCCATT CGGTTTAGCACAGAACATGGATCCCAATTATGTGACAAAGCATAAATACTTTTACGAAGA TAAATTTATGGATTTCAATCCGCTAGTTGAAAATGTTGCTCACATGACGAAGAAGCTACT GTATGCGAATAATCATTTTCTCTCATGTGGCCTTATCCTTGGAGGATACGACAAAGAGAA GAAGCAGCAGCTGTATTCGGTTAACCTGAATGGAAGCATCGTCCAACGGTTCGATTACGC TGTAAGCGGTAGTGGCAGTGTGTACATACAGTCCTACCTGCAGGACAAGTACAAGAAGAA TATGAGCAAAAAGGAGTGCTTTGAGTTGATCCTGGGGTGCGTCAAGTACGCCATGTACAA CGACAACAGCAGCGGGGGCATCGTGCGCATCGTCAACATGACCAAGCTCTTCGTGGAGGA GTTCACCGTCACCAACACGCAGCTGCACTTCGATTACTAG
  • Download Fasta

  • Fasta :-

    MQVERMEADFMGAPLREDPYNIKTPISDGTTIIGIIYEHGVMLACDTRTSSGTLVSNKCS RKINRINENIYACRSGASAHSQKVIELIKHFCLSMKCENRKKGRFHEDEVITDDLANEED IDLSAINNPFGLAQNMDPNYVTKHKYFYEDKFMDFNPLVENVAHMTKKLLYANNHFLSCG LILGGYDKEKKQQLYSVNLNGSIVQRFDYAVSGSGSVYIQSYLQDKYKKNMSKKECFELI LGCVKYAMYNDNSSGGIVRIVNMTKLFVEEFTVTNTQLHFDY

  • title: active site
  • coordinates: T30,D46,R48,K62
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PVX_08711581 SASAHSQKVI0.995unspPVX_087115232 SKKNMSKKEC0.996unsp
PVX_087115      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India