PVX_088150 | 26S proteasome regulatory subunit RPN10, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_088150OTHER0.9999750.0000240.000001
No Results

  • Fasta :-

    >PVX_088150 MSSIEATIICVDNSDYNRNEDIVPNRFLSQIDCVNVLCCNKTSMHYKNNIGIVMMAGDKT KVKVSLTNDIGQLLSCIHEIKLDGTCDIVRSLLIAQLALKHRVDKNLGQKIMLFVGSPLK VNEKQLISTGKQLKKNNICLDIISYGDIHKNRDILMKLYDSVNSNGNCKFIECPETENNL SRFVLNSFLNNNDYNIGNIQEDEQLMNAMQMSLEESQQLPEQKNVSAANGAVHSTNNDLP TIEEIESMKDIDNELKEALILSLKEYTEKNKQGGKQQDGQQQGGQQQGGQQQGGELQGDQ LQGDANNPPAPPPNGGNPAGTSQPSGDTPFDAKGEENLTLVNESYKNNFDSGDHQMQVED PKEKKENESYEKVFKIDKEDGGLQDNAQGSGINEHIYSSENGDGGMVLPNEQAEGASPPS AMHIQDTSYISNILGKINANVSVFGGEGDKEKEKQAGVSGKSGGKSGGEPGDEPDAASGA GQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_088150.fa Sequence name : PVX_088150 Sequence length : 482 VALUES OF COMPUTED PARAMETERS Coef20 : 3.842 CoefTot : 0.224 ChDiff : -28 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.212 1.035 -0.070 0.386 MesoH : -0.830 0.397 -0.386 0.149 MuHd_075 : 10.297 8.969 3.936 2.605 MuHd_095 : 1.818 8.275 2.639 4.053 MuHd_100 : 9.379 7.031 3.022 2.347 MuHd_105 : 20.700 6.730 5.144 0.394 Hmax_075 : -4.638 5.483 -1.302 1.482 Hmax_095 : -2.712 7.100 -0.346 3.460 Hmax_100 : -1.700 6.400 0.428 2.000 Hmax_105 : 5.300 9.100 1.189 1.810 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9662 0.0338 DFMC : 0.9577 0.0423
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 482 PVX_088150 MSSIEATIICVDNSDYNRNEDIVPNRFLSQIDCVNVLCCNKTSMHYKNNIGIVMMAGDKTKVKVSLTNDIGQLLSCIHEI 80 KLDGTCDIVRSLLIAQLALKHRVDKNLGQKIMLFVGSPLKVNEKQLISTGKQLKKNNICLDIISYGDIHKNRDILMKLYD 160 SVNSNGNCKFIECPETENNLSRFVLNSFLNNNDYNIGNIQEDEQLMNAMQMSLEESQQLPEQKNVSAANGAVHSTNNDLP 240 TIEEIESMKDIDNELKEALILSLKEYTEKNKQGGKQQDGQQQGGQQQGGQQQGGELQGDQLQGDANNPPAPPPNGGNPAG 320 TSQPSGDTPFDAKGEENLTLVNESYKNNFDSGDHQMQVEDPKEKKENESYEKVFKIDKEDGGLQDNAQGSGINEHIYSSE 400 NGDGGMVLPNEQAEGASPPSAMHIQDTSYISNILGKINANVSVFGGEGDKEKEKQAGVSGKSGGKSGGEPGDEPDAASGA 480 GQ 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .. 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_088150 18 DNSDYNR|NE 0.096 . PVX_088150 26 EDIVPNR|FL 0.136 . PVX_088150 41 NVLCCNK|TS 0.054 . PVX_088150 47 KTSMHYK|NN 0.104 . PVX_088150 59 VMMAGDK|TK 0.053 . PVX_088150 61 MAGDKTK|VK 0.062 . PVX_088150 63 GDKTKVK|VS 0.064 . PVX_088150 81 SCIHEIK|LD 0.067 . PVX_088150 90 GTCDIVR|SL 0.112 . PVX_088150 100 IAQLALK|HR 0.058 . PVX_088150 102 QLALKHR|VD 0.080 . PVX_088150 105 LKHRVDK|NL 0.329 . PVX_088150 110 DKNLGQK|IM 0.058 . PVX_088150 120 FVGSPLK|VN 0.062 . PVX_088150 124 PLKVNEK|QL 0.066 . PVX_088150 131 QLISTGK|QL 0.070 . PVX_088150 134 STGKQLK|KN 0.069 . PVX_088150 135 TGKQLKK|NN 0.086 . PVX_088150 150 SYGDIHK|NR 0.059 . PVX_088150 152 GDIHKNR|DI 0.167 . PVX_088150 157 NRDILMK|LY 0.073 . PVX_088150 169 NSNGNCK|FI 0.082 . PVX_088150 182 TENNLSR|FV 0.171 . PVX_088150 223 QQLPEQK|NV 0.098 . PVX_088150 249 EEIESMK|DI 0.089 . PVX_088150 256 DIDNELK|EA 0.054 . PVX_088150 264 ALILSLK|EY 0.059 . PVX_088150 269 LKEYTEK|NK 0.065 . PVX_088150 271 EYTEKNK|QG 0.074 . PVX_088150 275 KNKQGGK|QQ 0.071 . PVX_088150 333 DTPFDAK|GE 0.060 . PVX_088150 346 LVNESYK|NN 0.077 . PVX_088150 362 MQVEDPK|EK 0.066 . PVX_088150 364 VEDPKEK|KE 0.057 . PVX_088150 365 EDPKEKK|EN 0.112 . PVX_088150 372 ENESYEK|VF 0.053 . PVX_088150 375 SYEKVFK|ID 0.060 . PVX_088150 378 KVFKIDK|ED 0.063 . PVX_088150 436 ISNILGK|IN 0.066 . PVX_088150 450 FGGEGDK|EK 0.059 . PVX_088150 452 GEGDKEK|EK 0.075 . PVX_088150 454 GDKEKEK|QA 0.095 . PVX_088150 461 QAGVSGK|SG 0.153 . PVX_088150 465 SGKSGGK|SG 0.075 . ____________________________^_________________

  • Fasta :-

    >PVX_088150 GCAGATGAGCGAAAAGAATTCCCTCGCCACTAACCAAACAAGAGGAAAAAAAAAAAAAAA AAATGAACGAGCTGAGGTATGCCATCATCTTTACATCAACCGAGTGAACGCATCCTACGC GGGCATTTACCATTTACCCCTCACGTGAAAGCTGTGCTGAGTGTACGAATTCCCAGCCGG GGCAAACACCTGCCTTTTGGCACACTGGAGGTACCGTTTGCGCTCCAGCCCCGCCCTGAC GAAAGGAGAAGCCGCCACCGCGAAGCGGCACAACGCTTCCCCCGCTCTGCTTTCTTGCCG CCACCGCAAAGCGGCACAACGCTTCCCCCGCTCTGCTTTCTTGCCGCCACCGCAAAGCGG CAGTGCGAACCCTTTTTGCGCGCCAGCCGAATCGCCCAAAATGAGCTCCATCGAGGCGAC CATCATCTGCGTAGATAACAGCGATTACAACAGGAATGAGGACATCGTGCCGAACAGGTT TCTCTCGCAGATCGACTGCGTAAACGTGCTGTGCTGCAACAAGACGAGCATGCACTACAA GAACAACATCGGCATCGTGATGATGGCCGGAGACAAGACGAAGGTGAAGGTGTCCCTGAC GAACGACATCGGGCAGCTGCTCTCCTGCATCCACGAAATCAAGTTGGACGGCACGTGCGA CATCGTGAGGAGCCTGCTAATCGCGCAGCTGGCCCTGAAGCACCGCGTGGATAAGAACCT GGGCCAAAAAATTATGCTCTTCGTCGGGAGCCCCTTAAAAGTGAATGAAAAGCAACTCAT CAGTACAGGTAAGCAACTGAAGAAGAATAACATCTGCCTAGACATCATCAGCTACGGAGA CATACACAAAAATAGGGACATCCTCATGAAGCTATACGATAGCGTAAACAGTAATGGCAA CTGTAAGTTTATAGAATGCCCTGAAACGGAAAATAACCTCAGCAGATTTGTTCTAAATTC CTTTCTTAACAATAACGATTATAATATTGGGAACATCCAGGAGGATGAGCAGTTGATGAA TGCCATGCAGATGTCTCTAGAGGAAAGCCAGCAGCTACCCGAGCAGAAAAATGTCTCTGC TGCAAACGGAGCTGTCCACTCGACCAACAACGACCTGCCTACCATCGAAGAAATTGAGAG CATGAAGGACATCGACAATGAGTTGAAGGAGGCCTTGATTTTGTCCCTTAAGGAATACAC GGAGAAGAACAAGCAGGGGGGGAAGCAGCAGGATGGTCAGCAGCAGGGTGGTCAGCAGCA GGGTGGTCAGCAGCAGGGTGGTGAGCTGCAGGGCGACCAGCTGCAGGGCGACGCGAATAA CCCCCCGGCGCCCCCACCAAATGGAGGCAACCCCGCAGGAACAAGCCAACCCAGTGGAGA CACCCCCTTCGACGCAAAAGGGGAAGAAAATTTGACGCTCGTAAATGAAAGCTACAAAAA TAACTTTGACAGCGGAGACCACCAGATGCAAGTTGAAGACCCCAAAGAGAAAAAAGAAAA CGAAAGCTACGAGAAGGTTTTTAAAATAGATAAGGAGGATGGGGGGTTGCAGGATAACGC TCAAGGGAGTGGCATAAATGAGCATATATACAGCTCGGAAAATGGGGATGGGGGGATGGT TCTACCGAATGAGCAAGCGGAGGGGGCATCCCCCCCCTCGGCCATGCACATTCAGGACAC CAGCTACATCTCCAACATCCTGGGGAAGATTAACGCCAACGTGAGCGTGTTCGGCGGGGA GGGGGATAAGGAGAAGGAGAAGCAGGCGGGGGTGAGCGGCAAGTCGGGCGGCAAGTCAGG CGGCGAACCGGGCGACGAGCCGGACGCCGCCTCGGGGGCGGGCCAGTAG
  • Download Fasta

  • Fasta :-

    MSSIEATIICVDNSDYNRNEDIVPNRFLSQIDCVNVLCCNKTSMHYKNNIGIVMMAGDKT KVKVSLTNDIGQLLSCIHEIKLDGTCDIVRSLLIAQLALKHRVDKNLGQKIMLFVGSPLK VNEKQLISTGKQLKKNNICLDIISYGDIHKNRDILMKLYDSVNSNGNCKFIECPETENNL SRFVLNSFLNNNDYNIGNIQEDEQLMNAMQMSLEESQQLPEQKNVSAANGAVHSTNNDLP TIEEIESMKDIDNELKEALILSLKEYTEKNKQGGKQQDGQQQGGQQQGGQQQGGELQGDQ LQGDANNPPAPPPNGGNPAGTSQPSGDTPFDAKGEENLTLVNESYKNNFDSGDHQMQVED PKEKKENESYEKVFKIDKEDGGLQDNAQGSGINEHIYSSENGDGGMVLPNEQAEGASPPS AMHIQDTSYISNILGKINANVSVFGGEGDKEKEKQAGVSGKSGGKSGGEPGDEPDAASGA GQ

  • title: metal ion-dependent adhesion site (MIDAS)
  • coordinates: D12,C86,G116
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
PVX_088150T3210.6430.426PVX_088150S3220.5130.373PVX_088150S4780.5000.211
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
PVX_088150T3210.6430.426PVX_088150S3220.5130.373PVX_088150S4780.5000.211
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PVX_088150344 SLVNESYKNN0.995unspPVX_088150344 SLVNESYKNN0.995unspPVX_088150344 SLVNESYKNN0.995unspPVX_088150459 SQAGVSGKSG0.992unspPVX_088150466 SSGGKSGGEP0.995unspPVX_08815029 SNRFLSQIDC0.993unspPVX_088150247 SEEIESMKDI0.998unsp
PVX_088150      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India