PVX_088170 | proteasome subunit alpha type-6, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_088170OTHER0.9994610.0002720.000267
No Results

  • Fasta :-

    >PVX_088170 MVRQSQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSIGVKGEHCAVIISQKKMATQY ISQDKLLDYNNITNIYNITDEIGCSMVGMPGDCLSMVYKARIEAAEFLYSNGHNVNVETL CRNICDKIQIFTQHAYMRLHACSGMIIGMDEDNKPGLFKFDPSGFCAGYRACVVGNKEQE SISILERLLEKRKKKIQQETLEEDVQNTIILAIEALQTILAFDLKANEIEMAIVSKTNPN FTQISEKEIDNYLTFIAERD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_088170.fa Sequence name : PVX_088170 Sequence length : 260 VALUES OF COMPUTED PARAMETERS Coef20 : 3.774 CoefTot : -0.108 ChDiff : -7 ZoneTo : 9 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.141 1.735 0.245 0.616 MesoH : -0.695 0.214 -0.361 0.158 MuHd_075 : 3.995 3.733 1.471 0.924 MuHd_095 : 33.034 14.749 5.718 7.001 MuHd_100 : 31.622 17.345 5.763 7.429 MuHd_105 : 25.289 15.162 4.748 6.403 Hmax_075 : 2.800 0.600 -2.081 1.423 Hmax_095 : 9.450 5.775 -0.465 3.098 Hmax_100 : 10.500 7.400 -0.667 3.720 Hmax_105 : 9.700 8.100 -0.439 4.020 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9399 0.0601 DFMC : 0.9696 0.0304
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 260 PVX_088170 MVRQSQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSIGVKGEHCAVIISQKKMATQYISQDKLLDYNNITNIYNITD 80 EIGCSMVGMPGDCLSMVYKARIEAAEFLYSNGHNVNVETLCRNICDKIQIFTQHAYMRLHACSGMIIGMDEDNKPGLFKF 160 DPSGFCAGYRACVVGNKEQESISILERLLEKRKKKIQQETLEEDVQNTIILAIEALQTILAFDLKANEIEMAIVSKTNPN 240 FTQISEKEIDNYLTFIAERD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_088170 3 ----MVR|QS 0.084 . PVX_088170 11 SQSMYDR|HL 0.107 . PVX_088170 30 QIEYAIK|AV 0.070 . PVX_088170 33 YAIKAVK|NT 0.059 . PVX_088170 43 ITSIGVK|GE 0.067 . PVX_088170 54 AVIISQK|KM 0.061 . PVX_088170 55 VIISQKK|MA 0.131 . PVX_088170 65 QYISQDK|LL 0.063 . PVX_088170 99 CLSMVYK|AR 0.075 . PVX_088170 101 SMVYKAR|IE 0.105 . PVX_088170 122 NVETLCR|NI 0.093 . PVX_088170 127 CRNICDK|IQ 0.071 . PVX_088170 138 TQHAYMR|LH 0.105 . PVX_088170 154 GMDEDNK|PG 0.056 . PVX_088170 159 NKPGLFK|FD 0.068 . PVX_088170 170 GFCAGYR|AC 0.087 . PVX_088170 177 ACVVGNK|EQ 0.057 . PVX_088170 187 SISILER|LL 0.096 . PVX_088170 191 LERLLEK|RK 0.060 . PVX_088170 192 ERLLEKR|KK 0.188 . PVX_088170 193 RLLEKRK|KK 0.093 . PVX_088170 194 LLEKRKK|KI 0.122 . PVX_088170 195 LEKRKKK|IQ 0.283 . PVX_088170 225 ILAFDLK|AN 0.070 . PVX_088170 236 EMAIVSK|TN 0.060 . PVX_088170 247 FTQISEK|EI 0.077 . PVX_088170 259 LTFIAER|D- 0.096 . ____________________________^_________________

  • Fasta :-

    >PVX_088170 ATGGTGAGACAGTCGCAGAGCATGTACGATAGGCACCTGACTATCTTCTCCCCCGATGGG AACCTCTACCAGATCGAATACGCCATCAAAGCAGTGAAGAACACCAACATAACGTCCATC GGCGTGAAAGGAGAACACTGTGCCGTCATCATTTCCCAAAAAAAAATGGCAACGCAGTAC ATCTCGCAGGACAAACTGCTAGACTACAACAACATAACGAACATTTACAATATAACCGAC GAGATCGGATGCTCCATGGTGGGAATGCCTGGGGATTGCCTCAGCATGGTGTATAAGGCC AGGATAGAGGCCGCCGAGTTCCTTTATTCCAATGGGCATAACGTTAACGTGGAAACCTTG TGCAGGAACATCTGCGACAAAATTCAGATCTTCACGCAGCACGCCTACATGAGGCTGCAC GCTTGCAGCGGAATGATCATAGGCATGGACGAGGACAACAAGCCGGGGCTTTTCAAGTTC GACCCGTCGGGGTTCTGCGCAGGGTACCGCGCGTGCGTGGTCGGGAACAAGGAGCAGGAA AGCATAAGCATACTGGAGAGGCTGCTGGAGAAGAGGAAGAAGAAAATACAGCAAGAGACG TTGGAGGAGGATGTACAGAACACCATCATCTTGGCCATAGAAGCGCTGCAGACCATTTTG GCGTTTGACTTGAAGGCCAACGAAATAGAAATGGCGATCGTTTCGAAGACGAACCCCAAT TTTACGCAAATCAGCGAGAAGGAGATCGACAACTATTTGACCTTCATCGCGGAGCGGGAT TAG
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  • Fasta :-

    MVRQSQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSIGVKGEHCAVIISQKKMATQY ISQDKLLDYNNITNIYNITDEIGCSMVGMPGDCLSMVYKARIEAAEFLYSNGHNVNVETL CRNICDKIQIFTQHAYMRLHACSGMIIGMDEDNKPGLFKFDPSGFCAGYRACVVGNKEQE SISILERLLEKRKKKIQQETLEEDVQNTIILAIEALQTILAFDLKANEIEMAIVSKTNPN FTQISEKEIDNYLTFIAERD

  • title: active site
  • coordinates: I37,Q53,K55,N74,N176
No Results
No Results
No Results
PVX_088170      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India