PVX_088955 | rhomboid protease ROM3, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_088955OTHER0.9998890.0000170.000095
No Results

  • Fasta :-

    >PVX_088955 MLRGDLQTGGNALAASEDVPLMEGSPKGGTFYDMLFPDMSLRRIIVWISFAQIVIYILSC LLSENLTAPSVQVLTFLGATYGPAVKQGEIWRLLFPIFLHANWWHLIINIMCMLNLGLVI ESKYKKGNFIFLYVLSGVIGNVLTTICNPCQLAVGASTSGFGLIGFSILEIFLAWANLSR RAKNYYIFNVSIFVLFFLFVSFSPTVDFFGHIGGFLCGAFLACHYNRAMGYDFFQTSLYY SFACICALIVLYLPVRLYVTDMPCAPFH
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_088955.fa Sequence name : PVX_088955 Sequence length : 268 VALUES OF COMPUTED PARAMETERS Coef20 : 3.342 CoefTot : 0.007 ChDiff : 1 ZoneTo : 4 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.376 2.359 0.490 0.860 MesoH : 1.031 1.262 0.102 0.537 MuHd_075 : 20.042 8.377 4.803 3.840 MuHd_095 : 22.144 13.112 5.283 4.938 MuHd_100 : 25.147 15.754 6.597 4.977 MuHd_105 : 18.867 14.917 6.115 3.880 Hmax_075 : 1.400 6.300 -0.992 2.987 Hmax_095 : 4.600 4.812 -1.014 2.853 Hmax_100 : 3.000 8.500 -0.126 3.340 Hmax_105 : 13.533 14.000 2.540 4.923 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9514 0.0486 DFMC : 0.9579 0.0421
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 268 PVX_088955 MLRGDLQTGGNALAASEDVPLMEGSPKGGTFYDMLFPDMSLRRIIVWISFAQIVIYILSCLLSENLTAPSVQVLTFLGAT 80 YGPAVKQGEIWRLLFPIFLHANWWHLIINIMCMLNLGLVIESKYKKGNFIFLYVLSGVIGNVLTTICNPCQLAVGASTSG 160 FGLIGFSILEIFLAWANLSRRAKNYYIFNVSIFVLFFLFVSFSPTVDFFGHIGGFLCGAFLACHYNRAMGYDFFQTSLYY 240 SFACICALIVLYLPVRLYVTDMPCAPFH 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_088955 3 ----MLR|GD 0.082 . PVX_088955 27 LMEGSPK|GG 0.066 . PVX_088955 42 FPDMSLR|RI 0.081 . PVX_088955 43 PDMSLRR|II 0.122 . PVX_088955 86 TYGPAVK|QG 0.060 . PVX_088955 92 KQGEIWR|LL 0.100 . PVX_088955 123 GLVIESK|YK 0.062 . PVX_088955 125 VIESKYK|KG 0.058 . PVX_088955 126 IESKYKK|GN 0.130 . PVX_088955 180 AWANLSR|RA 0.078 . PVX_088955 181 WANLSRR|AK 0.146 . PVX_088955 183 NLSRRAK|NY 0.169 . PVX_088955 227 LACHYNR|AM 0.122 . PVX_088955 256 VLYLPVR|LY 0.072 . ____________________________^_________________

  • Fasta :-

    >PVX_088955 ATGCTCCGAGGAGATTTACAGACGGGGGGGAACGCCCTGGCGGCGAGTGAAGATGTGCCC CTGATGGAGGGGAGCCCCAAGGGGGGGACCTTCTACGACATGCTCTTTCCGGACATGTCC CTGAGGAGAATCATCGTATGGATTAGCTTCGCCCAAATTGTCATTTACATTTTGAGTTGC CTCTTAAGCGAAAACTTAACGGCGCCCAGCGTGCAGGTGTTGACGTTCCTGGGCGCCACG TATGGCCCCGCCGTTAAGCAAGGAGAAATCTGGAGACTGCTGTTCCCAATTTTCCTGCAT GCGAATTGGTGGCACTTAATAATTAACATCATGTGCATGCTGAACTTAGGGCTAGTGATA GAGAGCAAATACAAAAAGGGGAATTTCATTTTCCTTTACGTCCTCTCAGGGGTGATTGGA AATGTATTAACGACCATCTGCAACCCCTGTCAGCTAGCTGTGGGTGCCTCCACAAGTGGA TTCGGCCTCATTGGGTTTTCCATTCTCGAAATATTTTTAGCCTGGGCCAATTTATCTAGG CGGGCTAAGAACTACTATATTTTTAATGTGTCTATTTTTGTGTTGTTTTTTTTGTTCGTT AGTTTTTCTCCCACCGTCGATTTCTTTGGGCACATTGGCGGCTTCCTCTGCGGGGCCTTC CTGGCCTGCCACTACAACCGCGCCATGGGATACGACTTCTTCCAGACGTCCCTGTACTAC AGCTTCGCCTGCATATGCGCTCTAATTGTTTTGTACCTCCCAGTTCGGCTCTACGTGACG GACATGCCATGTGCGCCCTTCCACTAG
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  • Fasta :-

    MLRGDLQTGGNALAASEDVPLMEGSPKGGTFYDMLFPDMSLRRIIVWISFAQIVIYILSC LLSENLTAPSVQVLTFLGATYGPAVKQGEIWRLLFPIFLHANWWHLIINIMCMLNLGLVI ESKYKKGNFIFLYVLSGVIGNVLTTICNPCQLAVGASTSGFGLIGFSILEIFLAWANLSR RAKNYYIFNVSIFVLFFLFVSFSPTVDFFGHIGGFLCGAFLACHYNRAMGYDFFQTSLYY SFACICALIVLYLPVRLYVTDMPCAPFH

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PVX_088955      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India