PVX_089640 | 26S proteasome AAA-ATPase subunit RPT3, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_089640OTHER0.9999950.0000020.000003
No Results

  • Fasta :-

    >PVX_089640 MDNISKYLKEEDYYIKLKILKKQIDVLNIQEEYIKEEHKNLKRELIRSKNEIKRIQSVPL IIGQFLDIIDSNYGIVSSTAGSNYYVRILSTLNKEDLKPSVSVALHRHSHSIVNILPSES DSSIQLLQVSERPNVKYTDLGGLDTQKQEMREAVELPLKSPELYEKIGIEPPMGILIYGP PGTGKTMLVKAVANETQVTFIGVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIIFIDEV DAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNVKVIMATNRADTLDPALLRPGRL DRKIEFPLPDRKQKRLIFQTIISKMNVSSDVNIENFVVRTDKISAADIAAIAQEAGMQAI RKNRYIITANDFEQGYRTHVRKQLRDYEFYNV
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_089640.fa Sequence name : PVX_089640 Sequence length : 392 VALUES OF COMPUTED PARAMETERS Coef20 : 3.228 CoefTot : 0.000 ChDiff : 2 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.041 1.188 0.033 0.542 MesoH : -0.620 0.277 -0.386 0.228 MuHd_075 : 20.586 9.162 5.664 2.823 MuHd_095 : 24.257 18.077 7.576 4.843 MuHd_100 : 25.058 18.534 7.565 5.641 MuHd_105 : 30.996 20.272 8.792 7.022 Hmax_075 : -12.367 -0.100 -4.668 0.747 Hmax_095 : -5.000 6.500 -2.717 1.960 Hmax_100 : -4.400 6.900 -2.163 2.720 Hmax_105 : -5.250 4.113 -3.070 2.467 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8914 0.1086 DFMC : 0.9062 0.0938
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 392 PVX_089640 MDNISKYLKEEDYYIKLKILKKQIDVLNIQEEYIKEEHKNLKRELIRSKNEIKRIQSVPLIIGQFLDIIDSNYGIVSSTA 80 GSNYYVRILSTLNKEDLKPSVSVALHRHSHSIVNILPSESDSSIQLLQVSERPNVKYTDLGGLDTQKQEMREAVELPLKS 160 PELYEKIGIEPPMGILIYGPPGTGKTMLVKAVANETQVTFIGVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIIFIDEV 240 DAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRKQKRLIFQT 320 IISKMNVSSDVNIENFVVRTDKISAADIAAIAQEAGMQAIRKNRYIITANDFEQGYRTHVRKQLRDYEFYNV 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ........................................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_089640 6 -MDNISK|YL 0.059 . PVX_089640 9 NISKYLK|EE 0.064 . PVX_089640 16 EEDYYIK|LK 0.053 . PVX_089640 18 DYYIKLK|IL 0.069 . PVX_089640 21 IKLKILK|KQ 0.066 . PVX_089640 22 KLKILKK|QI 0.109 . PVX_089640 35 IQEEYIK|EE 0.060 . PVX_089640 39 YIKEEHK|NL 0.062 . PVX_089640 42 EEHKNLK|RE 0.054 . PVX_089640 43 EHKNLKR|EL 0.136 . PVX_089640 47 LKRELIR|SK 0.137 . PVX_089640 49 RELIRSK|NE 0.059 . PVX_089640 53 RSKNEIK|RI 0.066 . PVX_089640 54 SKNEIKR|IQ 0.190 . PVX_089640 87 GSNYYVR|IL 0.107 . PVX_089640 94 ILSTLNK|ED 0.058 . PVX_089640 98 LNKEDLK|PS 0.058 . PVX_089640 107 VSVALHR|HS 0.101 . PVX_089640 132 LLQVSER|PN 0.094 . PVX_089640 136 SERPNVK|YT 0.076 . PVX_089640 147 GGLDTQK|QE 0.058 . PVX_089640 151 TQKQEMR|EA 0.091 . PVX_089640 159 AVELPLK|SP 0.071 . PVX_089640 166 SPELYEK|IG 0.062 . PVX_089640 185 GPPGTGK|TM 0.058 . PVX_089640 190 GKTMLVK|AV 0.074 . PVX_089640 211 GSEFVQK|YL 0.136 . PVX_089640 218 YLGEGPR|MV 0.154 . PVX_089640 221 EGPRMVR|DV 0.294 . PVX_089640 225 MVRDVFR|LA 0.120 . PVX_089640 228 DVFRLAR|EN 0.259 . PVX_089640 246 VDAIATK|RF 0.064 . PVX_089640 247 DAIATKR|FD 0.186 . PVX_089640 256 AQTGADR|EV 0.095 . PVX_089640 260 ADREVQR|IL 0.115 . PVX_089640 274 QMDGFDK|ST 0.080 . PVX_089640 279 DKSTNVK|VI 0.070 . PVX_089640 286 VIMATNR|AD 0.076 . PVX_089640 296 LDPALLR|PG 0.069 . PVX_089640 299 ALLRPGR|LD 0.217 . PVX_089640 302 RPGRLDR|KI 0.309 . PVX_089640 303 PGRLDRK|IE 0.069 . PVX_089640 311 EFPLPDR|KQ 0.064 . PVX_089640 312 FPLPDRK|QK 0.075 . PVX_089640 314 LPDRKQK|RL 0.141 . PVX_089640 315 PDRKQKR|LI 0.299 . PVX_089640 324 FQTIISK|MN 0.055 . PVX_089640 339 IENFVVR|TD 0.094 . PVX_089640 342 FVVRTDK|IS 0.108 . PVX_089640 361 AGMQAIR|KN 0.081 . PVX_089640 362 GMQAIRK|NR 0.079 . PVX_089640 364 QAIRKNR|YI 0.431 . PVX_089640 377 DFEQGYR|TH 0.064 . PVX_089640 381 GYRTHVR|KQ 0.079 . PVX_089640 382 YRTHVRK|QL 0.137 . PVX_089640 385 HVRKQLR|DY 0.129 . ____________________________^_________________

  • Fasta :-

    >PVX_089640 GACGAAGCAGCCGTTGACGAAGCAGCCGTTGACGAAGCACCCTTTGGCGAAGCACCCCTT TGCTGCGTTGCTGCGGCTCCCCCCCCGGAAAGGATGTCCCGAAAGAAGCGCTCGACCAAG TAGCCAAGAGAAACGCAAACGGTTAAAAAAAAAAAAAAAAAAGAGAAGAATGGATAACAT TAGCAAGTACCTGAAGGAGGAGGACTACTACATTAAGTTGAAAATTTTGAAGAAGCAGAT TGACGTGCTGAACATACAGGAGGAGTACATCAAGGAGGAGCACAAAAACCTGAAGAGGGA GCTGATCCGGTCGAAGAACGAAATAAAGCGCATACAGAGCGTGCCGCTGATCATCGGGCA GTTCCTGGACATCATTGACAGCAACTACGGGATCGTGAGTAGCACGGCGGGCTCAAACTA CTACGTGAGGATTCTTTCCACTCTGAATAAGGAGGACTTGAAGCCATCAGTTAGCGTGGC GTTGCATAGACACAGCCATTCGATCGTTAATATCCTGCCGTCCGAATCGGACAGCAGCAT ACAGCTCCTACAAGTGAGTGAGAGACCAAATGTAAAGTACACAGATTTGGGAGGACTAGA TACGCAGAAGCAGGAAATGAGAGAAGCCGTAGAATTGCCTCTAAAAAGCCCAGAATTATA TGAAAAAATTGGGATTGAACCCCCCATGGGGATTTTAATATATGGCCCCCCAGGTACTGG GAAGACGATGCTTGTTAAGGCGGTAGCGAATGAGACACAAGTTACCTTCATTGGGGTTGT GGGTTCCGAATTTGTGCAGAAATATTTAGGAGAAGGTCCCAGAATGGTTAGAGATGTATT CAGACTAGCCAGAGAAAACTCCCCGTCTATTATTTTTATAGATGAAGTAGATGCAATAGC GACGAAGAGATTTGATGCACAAACAGGGGCAGACAGAGAGGTGCAGAGAATCCTCCTAGA ATTATTAAATCAAATGGATGGCTTTGATAAATCTACCAATGTGAAAGTCATCATGGCAAC TAACAGGGCAGATACCTTAGATCCTGCTCTGTTGAGACCAGGGAGATTAGACAGAAAAAT TGAGTTTCCTCTCCCCGATAGGAAACAAAAGAGACTCATTTTCCAAACCATCATTAGCAA GATGAATGTCAGCAGCGATGTTAACATTGAGAACTTCGTGGTGCGCACCGATAAGATAAG CGCCGCCGACATTGCCGCCATTGCGCAGGAGGCCGGCATGCAGGCCATTCGCAAGAACAG GTACATCATCACGGCCAACGACTTCGAGCAGGGCTACCGCACCCATGTGAGGAAGCAGCT CCGCGATTACGAGTTTTACAACGTATAG
  • Download Fasta

  • Fasta :-

    MDNISKYLKEEDYYIKLKILKKQIDVLNIQEEYIKEEHKNLKRELIRSKNEIKRIQSVPL IIGQFLDIIDSNYGIVSSTAGSNYYVRILSTLNKEDLKPSVSVALHRHSHSIVNILPSES DSSIQLLQVSERPNVKYTDLGGLDTQKQEMREAVELPLKSPELYEKIGIEPPMGILIYGP PGTGKTMLVKAVANETQVTFIGVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIIFIDEV DAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNVKVIMATNRADTLDPALLRPGRL DRKIEFPLPDRKQKRLIFQTIISKMNVSSDVNIENFVVRTDKISAADIAAIAQEAGMQAI RKNRYIITANDFEQGYRTHVRKQLRDYEFYNV

  • title: ATP binding site
  • coordinates: P180,P181,G182,T183,G184,K185,T186,M187,D238,N285
No Results
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No Results
PVX_089640      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India