PVX_091350 | rhomboid protease ROM1, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_091350OTHER0.9999820.0000010.000018
No Results

  • Fasta :-

    >PVX_091350 MSNIHTLAEYRDDYGENLPFNRKYYQSQSSFIQRSKPIDVVNLIFPHFTWKSFIMAVSII QIIVFIISVSIKPADFLTPSDSLLITLGANVASRIKQGEIHRLILPIFLHANIFHTFFNV FFQLRMGFTLEKNYGIVKVIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGVVTSE LILLWHVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQM ENKPSWYDHMKMASYACLALLAIVPPIVLFAVPRTC
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_091350.fa Sequence name : PVX_091350 Sequence length : 276 VALUES OF COMPUTED PARAMETERS Coef20 : 3.077 CoefTot : 0.002 ChDiff : 6 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.294 2.841 0.529 0.915 MesoH : 0.669 1.123 -0.030 0.459 MuHd_075 : 16.137 7.850 3.758 4.065 MuHd_095 : 18.533 15.247 7.204 2.792 MuHd_100 : 23.358 20.736 8.117 4.508 MuHd_105 : 25.333 20.907 7.612 4.759 Hmax_075 : 1.400 2.100 -3.206 2.193 Hmax_095 : -3.150 5.500 -2.093 1.420 Hmax_100 : 2.400 10.900 0.031 2.840 Hmax_105 : 1.487 10.000 -0.311 2.713 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9930 0.0070 DFMC : 0.9932 0.0068
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 276 PVX_091350 MSNIHTLAEYRDDYGENLPFNRKYYQSQSSFIQRSKPIDVVNLIFPHFTWKSFIMAVSIIQIIVFIISVSIKPADFLTPS 80 DSLLITLGANVASRIKQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKVIILYFLTGIYGNILSSSVTYC 160 PIKVGASTSGMGLLGVVTSELILLWHVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQM 240 ENKPSWYDHMKMASYACLALLAIVPPIVLFAVPRTC 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_091350 11 HTLAEYR|DD 0.085 . PVX_091350 22 ENLPFNR|KY 0.100 . PVX_091350 23 NLPFNRK|YY 0.073 . PVX_091350 34 QSSFIQR|SK 0.141 . PVX_091350 36 SFIQRSK|PI 0.072 . PVX_091350 51 FPHFTWK|SF 0.098 . PVX_091350 72 IISVSIK|PA 0.089 . PVX_091350 94 GANVASR|IK 0.111 . PVX_091350 96 NVASRIK|QG 0.061 . PVX_091350 102 KQGEIHR|LI 0.086 . PVX_091350 125 NVFFQLR|MG 0.087 . PVX_091350 132 MGFTLEK|NY 0.067 . PVX_091350 138 KNYGIVK|VI 0.060 . PVX_091350 163 VTYCPIK|VG 0.055 . PVX_091350 189 LLWHVIR|HR 0.102 . PVX_091350 191 WHVIRHR|ER 0.068 . PVX_091350 193 VIRHRER|VV 0.135 . PVX_091350 243 NSQMENK|PS 0.061 . PVX_091350 251 SWYDHMK|MA 0.089 . PVX_091350 274 VLFAVPR|TC 0.091 . ____________________________^_________________

  • Fasta :-

    >PVX_091350 CCCTCACAAGTGTGCCAATAAATTCATCCAAAATTACGCGAACATTTTGATTTGCCTCCA TTTTTGGTGAAGAGAATTCCCCTTCTTGCAACGAAGCACGCTTGCCTTTGTTTTGGTCCC CATCGATTCATGAATATATTTTTATGTACACCTGCGCGCGCGCCCTTCATAGCCCGCCCT CCTCGTGCACACCATAACATACCGTGAAGGTGCCGCTTCAACCGCTACGGCGAGGCGCAA CCTCTTCTCGCAGCAAGTGCAGCCCACGCGGGTACGGTTACGCTGTTACGCGGTTACATG ATCGCTACTGCTTCCCATCTCGTGACAGCGGGCTTTGTGCTGCCGTTATATATATAGAGA GATAAACCGAGTGCGCCCCTCTGCGCCCGCTGATATTTTCCCCCGCAATATCCCCAAATT AACGTCCAAGTTCCAAGATGAGCAACATCCACACCCTAGCGGAGTACCGGGACGACTACG GGGAAAACCTCCCCTTCAACAGAAAGTACTACCAGTCCCAGAGTAGCTTCATACAAAGAT CGAAACCCATTGATGTAGTGAACCTCATATTTCCGCACTTCACCTGGAAGAGCTTTATCA TGGCCGTGTCCATTATACAAATAATTGTTTTCATAATATCAGTTAGTATAAAGCCCGCGG ATTTTTTGACTCCCTCTGACTCCCTGCTGATAACGCTAGGGGCGAATGTGGCTTCCAGGA TAAAGCAAGGCGAAATTCATAGATTAATTCTGCCCATATTTTTGCATGCGAACATATTTC ACACCTTTTTTAATGTGTTTTTCCAATTAAGAATGGGATTTACATTGGAGAAAAATTACG GCATTGTGAAGGTCATCATTCTTTATTTCTTGACAGGCATATACGGAAACATATTATCCT CCTCTGTTACTTACTGCCCCATCAAAGTTGGCGCGAGCACCTCCGGCATGGGATTACTGG GAGTTGTAACATCTGAATTGATACTACTATGGCATGTTATTAGACATAGAGAGAGAGTCG TTTTTAACATTATCTTTTTTTCTTTAATTTCTTTTTTTTACTATTTCACATTTAACGGGT CGAATATTGATCATGTTGGCCATTTGGGAGGACTGCTCTCAGGCATATCCATGGGCATAC TCTACAACAGCCAAATGGAGAACAAGCCGTCCTGGTACGACCACATGAAGATGGCTTCCT ACGCCTGCTTAGCTCTGTTGGCCATCGTCCCTCCGATTGTTTTGTTCGCCGTGCCGCGCA CCTGCTGA
  • Download Fasta

  • Fasta :-

    MSNIHTLAEYRDDYGENLPFNRKYYQSQSSFIQRSKPIDVVNLIFPHFTWKSFIMAVSII QIIVFIISVSIKPADFLTPSDSLLITLGANVASRIKQGEIHRLILPIFLHANIFHTFFNV FFQLRMGFTLEKNYGIVKVIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGVVTSE LILLWHVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQM ENKPSWYDHMKMASYACLALLAIVPPIVLFAVPRTC

    No Results
IDSitePositionGscoreIscore
PVX_091350T2750.5250.020
IDSitePositionGscoreIscore
PVX_091350T2750.5250.020
IDSitePeptideScoreMethod
PVX_091350245 SENKPSWYDH0.995unsp
PVX_091350      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India