PVX_092125 | 26S protease regulatory subunit 6a, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_092125OTHER0.9999920.0000040.000004
No Results

  • Fasta :-

    >PVX_092125 MNVENIFPNSDVNVEEIEKLTNAEIKTRISLIDTEIKILKNEHTRLKNEYKSLQEKIKDN VEKIHLNKMLPYLVANVVESLDLDDDEESNEPKDEYDLYVDNSKGGNNDQGFRDIDDEKR GKCMVIKTSTRQTIFLPVPGLIEASELKPGDLVGVNKDSYLIIDKLPPEYDNRVKAMEVI EKPSEDYSDIGGLDKQIEDLVEAIVLPMLHKEKFEKIGIKPPKGVLMHGPPGTGKTLLAR ACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEKAPAIIFIDELDAIGTKRFDS ELSGDREVQRTMLELLNQLDGFSTDDTVKVIAATNRPDTLDPALLRSGRLDRKIELPHPN EESRARILQIHSRKMNVHKDVNFEELARSTDDFNGAQLKAVCVEAGMIALRRGATEIDHE DFVEGITSVLSKKKSTLNYFT
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_092125.fa Sequence name : PVX_092125 Sequence length : 441 VALUES OF COMPUTED PARAMETERS Coef20 : 3.155 CoefTot : -0.134 ChDiff : -18 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.829 1.012 -0.103 0.465 MesoH : -0.580 0.277 -0.410 0.197 MuHd_075 : 13.422 13.732 4.085 4.235 MuHd_095 : 15.909 12.997 4.813 3.093 MuHd_100 : 22.796 18.484 7.419 4.558 MuHd_105 : 26.411 20.121 8.536 5.059 Hmax_075 : 2.200 7.100 -1.587 3.400 Hmax_095 : 2.363 10.850 -0.646 3.938 Hmax_100 : 10.900 15.900 1.704 5.280 Hmax_105 : 10.900 15.900 1.704 5.240 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9591 0.0409 DFMC : 0.9535 0.0465
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 441 PVX_092125 MNVENIFPNSDVNVEEIEKLTNAEIKTRISLIDTEIKILKNEHTRLKNEYKSLQEKIKDNVEKIHLNKMLPYLVANVVES 80 LDLDDDEESNEPKDEYDLYVDNSKGGNNDQGFRDIDDEKRGKCMVIKTSTRQTIFLPVPGLIEASELKPGDLVGVNKDSY 160 LIIDKLPPEYDNRVKAMEVIEKPSEDYSDIGGLDKQIEDLVEAIVLPMLHKEKFEKIGIKPPKGVLMHGPPGTGKTLLAR 240 ACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEKAPAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLD 320 GFSTDDTVKVIAATNRPDTLDPALLRSGRLDRKIELPHPNEESRARILQIHSRKMNVHKDVNFEELARSTDDFNGAQLKA 400 VCVEAGMIALRRGATEIDHEDFVEGITSVLSKKKSTLNYFT 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ......................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_092125 19 NVEEIEK|LT 0.059 . PVX_092125 26 LTNAEIK|TR 0.070 . PVX_092125 28 NAEIKTR|IS 0.077 . PVX_092125 37 LIDTEIK|IL 0.057 . PVX_092125 40 TEIKILK|NE 0.064 . PVX_092125 45 LKNEHTR|LK 0.087 . PVX_092125 47 NEHTRLK|NE 0.065 . PVX_092125 51 RLKNEYK|SL 0.102 . PVX_092125 56 YKSLQEK|IK 0.083 . PVX_092125 58 SLQEKIK|DN 0.087 . PVX_092125 63 IKDNVEK|IH 0.063 . PVX_092125 68 EKIHLNK|ML 0.062 . PVX_092125 93 EESNEPK|DE 0.076 . PVX_092125 104 LYVDNSK|GG 0.057 . PVX_092125 113 NNDQGFR|DI 0.127 . PVX_092125 119 RDIDDEK|RG 0.054 . PVX_092125 120 DIDDEKR|GK 0.176 . PVX_092125 122 DDEKRGK|CM 0.059 . PVX_092125 127 GKCMVIK|TS 0.070 . PVX_092125 131 VIKTSTR|QT 0.078 . PVX_092125 148 IEASELK|PG 0.062 . PVX_092125 157 DLVGVNK|DS 0.072 . PVX_092125 165 SYLIIDK|LP 0.051 . PVX_092125 173 PPEYDNR|VK 0.071 . PVX_092125 175 EYDNRVK|AM 0.069 . PVX_092125 182 AMEVIEK|PS 0.066 . PVX_092125 195 DIGGLDK|QI 0.070 . PVX_092125 211 VLPMLHK|EK 0.060 . PVX_092125 213 PMLHKEK|FE 0.066 . PVX_092125 216 HKEKFEK|IG 0.065 . PVX_092125 220 FEKIGIK|PP 0.070 . PVX_092125 223 IGIKPPK|GV 0.100 . PVX_092125 235 GPPGTGK|TL 0.059 . PVX_092125 240 GKTLLAR|AC 0.090 . PVX_092125 252 TNATFLK|LA 0.118 . PVX_092125 268 FIGDGAK|MV 0.085 . PVX_092125 271 DGAKMVR|DA 0.122 . PVX_092125 278 DAFNLAK|EK 0.067 . PVX_092125 280 FNLAKEK|AP 0.061 . PVX_092125 296 LDAIGTK|RF 0.062 . PVX_092125 297 DAIGTKR|FD 0.174 . PVX_092125 306 SELSGDR|EV 0.080 . PVX_092125 310 GDREVQR|TM 0.096 . PVX_092125 329 STDDTVK|VI 0.057 . PVX_092125 336 VIAATNR|PD 0.077 . PVX_092125 346 LDPALLR|SG 0.086 . PVX_092125 349 ALLRSGR|LD 0.220 . PVX_092125 352 RSGRLDR|KI 0.247 . PVX_092125 353 SGRLDRK|IE 0.071 . PVX_092125 364 HPNEESR|AR 0.108 . PVX_092125 366 NEESRAR|IL 0.090 . PVX_092125 373 ILQIHSR|KM 0.090 . PVX_092125 374 LQIHSRK|MN 0.092 . PVX_092125 379 RKMNVHK|DV 0.132 . PVX_092125 388 NFEELAR|ST 0.126 . PVX_092125 399 FNGAQLK|AV 0.088 . PVX_092125 411 AGMIALR|RG 0.095 . PVX_092125 412 GMIALRR|GA 0.209 . PVX_092125 432 ITSVLSK|KK 0.073 . PVX_092125 433 TSVLSKK|KS 0.096 . PVX_092125 434 SVLSKKK|ST 0.150 . ____________________________^_________________

  • Fasta :-

    >PVX_092125 ATGAACGTGGAGAACATCTTCCCCAACAGCGACGTGAACGTGGAGGAAATCGAGAAGCTG ACGAACGCCGAAATCAAAACGAGGATCAGCCTGATCGACACGGAAATCAAAATTCTAAAA AATGAGCACACGAGGCTGAAGAATGAGTACAAGAGTCTGCAGGAGAAGATAAAGGACAAC GTGGAAAAGATACATCTGAATAAGATGCTGCCCTACCTGGTTGCCAATGTCGTAGAATCG CTAGATCTGGATGACGATGAGGAATCAAATGAACCCAAAGATGAATACGACTTATACGTG GACAACTCAAAAGGGGGAAACAACGATCAAGGCTTTCGAGACATCGATGATGAGAAGAGA GGAAAGTGTATGGTCATCAAAACGTCCACCAGGCAAACCATATTTTTGCCTGTCCCCGGG TTGATAGAAGCATCCGAATTGAAACCAGGAGACCTCGTGGGGGTTAATAAAGACAGCTAC CTCATCATAGATAAGTTGCCACCCGAATATGACAATCGAGTGAAAGCCATGGAAGTTATA GAAAAACCATCGGAAGATTACTCAGACATTGGGGGGTTAGATAAACAGATAGAAGACCTG GTGGAGGCAATTGTGTTGCCCATGCTACATAAGGAAAAATTTGAAAAAATAGGAATTAAA CCTCCCAAAGGAGTTTTGATGCATGGCCCTCCAGGCACAGGTAAGACACTACTTGCTAGA GCCTGTGCCTCACAGACAAATGCCACTTTTTTAAAATTAGCTGGGCCGCAACTTGTGCAA ATGTTTATTGGGGATGGAGCGAAAATGGTCAGAGATGCTTTCAACTTGGCCAAAGAAAAA GCGCCAGCTATCATCTTCATTGACGAGTTAGATGCCATTGGAACCAAACGATTCGACAGC GAACTGTCTGGTGATAGGGAGGTACAAAGAACCATGCTGGAGTTGCTGAACCAGCTGGAC GGCTTCAGCACAGATGACACTGTCAAAGTGATTGCCGCAACGAATAGACCCGATACGCTC GACCCCGCTCTGCTTCGATCGGGGAGACTAGACAGGAAAATTGAATTGCCTCATCCAAAT GAAGAATCGAGGGCAAGGATTTTGCAGATTCATTCGCGCAAGATGAACGTCCACAAGGAT GTTAACTTTGAGGAGCTGGCTAGGTCCACCGACGACTTTAATGGGGCCCAGCTCAAGGCC GTGTGCGTGGAGGCCGGGATGATTGCCCTCCGCCGGGGCGCCACGGAGATCGACCACGAG GACTTCGTCGAGGGGATCACCTCCGTCCTCTCCAAGAAGAAGAGCACGCTCAATTACTTC ACCTAG
  • Download Fasta

  • Fasta :-

    MNVENIFPNSDVNVEEIEKLTNAEIKTRISLIDTEIKILKNEHTRLKNEYKSLQEKIKDN VEKIHLNKMLPYLVANVVESLDLDDDEESNEPKDEYDLYVDNSKGGNNDQGFRDIDDEKR GKCMVIKTSTRQTIFLPVPGLIEASELKPGDLVGVNKDSYLIIDKLPPEYDNRVKAMEVI EKPSEDYSDIGGLDKQIEDLVEAIVLPMLHKEKFEKIGIKPPKGVLMHGPPGTGKTLLAR ACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEKAPAIIFIDELDAIGTKRFDS ELSGDREVQRTMLELLNQLDGFSTDDTVKVIAATNRPDTLDPALLRSGRLDRKIELPHPN EESRARILQIHSRKMNVHKDVNFEELARSTDDFNGAQLKAVCVEAGMIALRRGATEIDHE DFVEGITSVLSKKKSTLNYFT

  • title: ATP binding site
  • coordinates: P230,P231,G232,T233,G234,K235,T236,L237,D288,N335
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PVX_092125431 STSVLSKKKS0.995unspPVX_092125431 STSVLSKKKS0.995unspPVX_092125431 STSVLSKKKS0.995unspPVX_09212530 SKTRISLIDT0.998unspPVX_092125300 SKRFDSELSG0.994unsp
PVX_092125      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India