PVX_093555 | proteasome subunit beta type-4, putative

UniProt_ID: A5KCH8

Computed_GO_Component_IDs: GO:0005839
Computed_GO_Components: proteasome core complex
Computed_GO_Function_IDs: GO:0004298
Computed_GO_Functions: threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603 GO:0006511
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	PVX_093555	OTHER	0.989178	0.003308	0.007514

No Results

Fasta :-
>PVX_093555 MTLGPVVTGTSVIALKYKHGILIAADKKASYGSYAKFQNVERIFKVNNKTVMSFSGELAD AQYLHETLTRVNVNNVMDKKSKYDLHNSKYYHAYVGRLFYNRKNKIDPLFNTIIVAGLNS QEYDDNDKDVLLYTGKHTTDEYKEINKEDLYIGFVDMHGTQFAGDYMTTGYARYFALTLL RERYKDYMTEEEAKTLLNECLRVLFYRDATASNKIQIVKITSKGVEYEEPYFLSCDVNSR DYVYPSIMLPSTGCMW
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_093555.fa Sequence name : PVX_093555 Sequence length : 256 VALUES OF COMPUTED PARAMETERS Coef20 : 3.602 CoefTot : -2.266 ChDiff : 0 ZoneTo : 56 KR : 8 DE : 2 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.059 1.053 0.053 0.451 MesoH : -1.051 -0.030 -0.544 0.096 MuHd_075 : 32.563 15.761 8.639 6.344 MuHd_095 : 34.519 21.549 9.540 8.030 MuHd_100 : 39.703 25.789 11.235 9.765 MuHd_105 : 41.139 25.267 11.438 9.850 Hmax_075 : 5.100 5.300 -0.561 3.140 Hmax_095 : 5.863 9.362 -0.724 3.728 Hmax_100 : 14.600 17.800 1.706 6.420 Hmax_105 : 13.825 14.962 1.420 5.574 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8265 0.1735 DFMC : 0.7409 0.2591

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 256 PVX_093555 MTLGPVVTGTSVIALKYKHGILIAADKKASYGSYAKFQNVERIFKVNNKTVMSFSGELADAQYLHETLTRVNVNNVMDKK 80 SKYDLHNSKYYHAYVGRLFYNRKNKIDPLFNTIIVAGLNSQEYDDNDKDVLLYTGKHTTDEYKEINKEDLYIGFVDMHGT 160 QFAGDYMTTGYARYFALTLLRERYKDYMTEEEAKTLLNECLRVLFYRDATASNKIQIVKITSKGVEYEEPYFLSCDVNSR 240 DYVYPSIMLPSTGCMW 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_093555 16 TSVIALK|YK 0.078 . PVX_093555 18 VIALKYK|HG 0.065 . PVX_093555 27 ILIAADK|KA 0.069 . PVX_093555 28 LIAADKK|AS 0.098 . PVX_093555 36 SYGSYAK|FQ 0.063 . PVX_093555 42 KFQNVER|IF 0.086 . PVX_093555 45 NVERIFK|VN 0.102 . PVX_093555 49 IFKVNNK|TV 0.066 . PVX_093555 70 LHETLTR|VN 0.073 . PVX_093555 79 VNNVMDK|KS 0.068 . PVX_093555 80 NNVMDKK|SK 0.140 . PVX_093555 82 VMDKKSK|YD 0.061 . PVX_093555 89 YDLHNSK|YY 0.070 . PVX_093555 97 YHAYVGR|LF 0.080 . PVX_093555 102 GRLFYNR|KN 0.072 . PVX_093555 103 RLFYNRK|NK 0.083 . PVX_093555 105 FYNRKNK|ID 0.106 . PVX_093555 128 EYDDNDK|DV 0.062 . PVX_093555 136 VLLYTGK|HT 0.067 . PVX_093555 143 HTTDEYK|EI 0.065 . PVX_093555 147 EYKEINK|ED 0.054 . PVX_093555 173 MTTGYAR|YF 0.079 . PVX_093555 181 FALTLLR|ER 0.069 . PVX_093555 183 LTLLRER|YK 0.076 . PVX_093555 185 LLRERYK|DY 0.093 . PVX_093555 194 MTEEEAK|TL 0.058 . PVX_093555 202 LLNECLR|VL 0.079 . PVX_093555 207 LRVLFYR|DA 0.220 . PVX_093555 214 DATASNK|IQ 0.060 . PVX_093555 219 NKIQIVK|IT 0.081 . PVX_093555 223 IVKITSK|GV 0.099 . PVX_093555 240 SCDVNSR|DY 0.078 . ____________________________^_________________

Fasta :-
>PVX_093555 ATGACGCTGGGCCCGGTGGTCACCGGCACGTCGGTCATCGCCCTCAAGTACAAGCATGGC ATTCTGATCGCGGCCGACAAGAAGGCGAGCTACGGGAGCTACGCCAAGTTCCAAAACGTG GAGCGCATCTTCAAAGTGAACAACAAGACGGTGATGAGCTTCAGCGGAGAGCTGGCGGAC GCCCAGTACCTTCACGAGACCCTCACCCGAGTGAACGTAAATAATGTGATGGACAAGAAG AGCAAATATGACCTTCACAATAGCAAGTACTATCATGCCTATGTGGGTAGACTCTTTTAT AACCGGAAGAATAAAATAGATCCCCTCTTCAATACCATCATCGTTGCGGGGTTAAATTCG CAAGAATACGATGACAATGATAAGGACGTGCTGCTTTACACGGGGAAGCACACAACTGAT GAGTATAAGGAAATCAATAAGGAGGACCTATACATCGGTTTCGTTGACATGCATGGGACT CAGTTCGCGGGAGATTATATGACCACTGGGTACGCTCGCTACTTCGCGCTGACTCTCCTT CGAGAGCGCTATAAGGATTACATGACTGAGGAGGAGGCGAAGACGCTGCTGAATGAGTGC CTGCGTGTGCTGTTTTACCGGGACGCCACGGCGTCTAATAAAATCCAAATTGTTAAAATA ACCAGCAAGGGCGTGGAGTACGAGGAGCCCTACTTCCTCTCCTGCGATGTTAATTCGCGC GACTACGTCTACCCCTCGATCATGCTGCCCTCCACGGGCTGCATGTGGTAG
Download Fasta

Fasta :-

MTLGPVVTGTSVIALKYKHGILIAADKKASYGSYAKFQNVERIFKVNNKTVMSFSGELAD AQYLHETLTRVNVNNVMDKKSKYDLHNSKYYHAYVGRLFYNRKNKIDPLFNTIIVAGLNS QEYDDNDKDVLLYTGKHTTDEYKEINKEDLYIGFVDMHGTQFAGDYMTTGYARYFALTLL RERYKDYMTEEEAKTLLNECLRVLFYRDATASNKIQIVKITSKGVEYEEPYFLSCDVNSR DYVYPSIMLPSTGCMW

Proteasome subunits

title: active site
coordinates: T10,D26,K28,R42,Y171,D208,A211,S212

	ID	Site	Position	Gscore	Iscore
	PVX_093555	T	2	0.533	0.687

	ID	Site	Position	Gscore	Iscore
	PVX_093555	T	2	0.533	0.687

	ID	Site	Peptide	Score	Method
	PVX_093555	81 S	MDKKSKYDL	0.993	unsp

PVX_093555

PVX_093555 | proteasome subunit beta type-4, putative

ID's

UniProt_ID: A5KCH8

GEO Functions

Computed_GO_Component_IDs: GO:0005839

Computed_GO_Components: proteasome core complex

Computed_GO_Function_IDs: GO:0004298

Computed_GO_Functions: threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603 GO:0006511

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India