PVX_094790 | proteasome subunit beta type-5, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_094790OTHER0.9999190.0000400.000041
No Results

  • Fasta :-

    >PVX_094790 MAERGGCLMSEIDNLINDVEEEGGENYDELQFCVAPVTVPRNFIKDTKTKCSNNKLFDFH KGTTTLAFKFKEGIIVAVDSRASMGSFISSQNVEKIIEINKNILGTMAGGAADCLYWEKY LGKIIKIYELRNNEKISVRAASTILSNILYQYKGYGLCCGIILSGYDHTGFNMFYIDDEG KKVEGNLFSCGSGSTYAYSILDSAYDYNLSLEQAVELARNAIYHATFRDGGSGGKVRVFY IHKNGYDKIIEGQDVYELHYHYTNPAQNDQHVM
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_094790.fa Sequence name : PVX_094790 Sequence length : 273 VALUES OF COMPUTED PARAMETERS Coef20 : 3.400 CoefTot : 0.141 ChDiff : -8 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.965 1.071 0.164 0.470 MesoH : -0.463 0.273 -0.288 0.222 MuHd_075 : 36.311 18.267 9.401 6.737 MuHd_095 : 28.670 21.761 6.978 5.561 MuHd_100 : 39.261 26.422 9.452 8.151 MuHd_105 : 38.697 25.719 9.578 8.877 Hmax_075 : 7.467 10.100 0.208 3.290 Hmax_095 : 4.500 13.600 0.735 3.620 Hmax_100 : 19.600 20.000 3.620 6.760 Hmax_105 : 18.100 19.900 3.751 6.740 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7113 0.2887 DFMC : 0.8214 0.1786
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 273 PVX_094790 MAERGGCLMSEIDNLINDVEEEGGENYDELQFCVAPVTVPRNFIKDTKTKCSNNKLFDFHKGTTTLAFKFKEGIIVAVDS 80 RASMGSFISSQNVEKIIEINKNILGTMAGGAADCLYWEKYLGKIIKIYELRNNEKISVRAASTILSNILYQYKGYGLCCG 160 IILSGYDHTGFNMFYIDDEGKKVEGNLFSCGSGSTYAYSILDSAYDYNLSLEQAVELARNAIYHATFRDGGSGGKVRVFY 240 IHKNGYDKIIEGQDVYELHYHYTNPAQNDQHVM 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_094790 4 ---MAER|GG 0.070 . PVX_094790 41 APVTVPR|NF 0.100 . PVX_094790 45 VPRNFIK|DT 0.088 . PVX_094790 48 NFIKDTK|TK 0.058 . PVX_094790 50 IKDTKTK|CS 0.076 . PVX_094790 55 TKCSNNK|LF 0.071 . PVX_094790 61 KLFDFHK|GT 0.072 . PVX_094790 69 TTTLAFK|FK 0.073 . PVX_094790 71 TLAFKFK|EG 0.078 . PVX_094790 81 IVAVDSR|AS 0.100 . PVX_094790 95 SSQNVEK|II 0.079 . PVX_094790 101 KIIEINK|NI 0.058 . PVX_094790 119 DCLYWEK|YL 0.078 . PVX_094790 123 WEKYLGK|II 0.066 . PVX_094790 126 YLGKIIK|IY 0.065 . PVX_094790 131 IKIYELR|NN 0.087 . PVX_094790 135 ELRNNEK|IS 0.063 . PVX_094790 139 NEKISVR|AA 0.145 . PVX_094790 153 NILYQYK|GY 0.066 . PVX_094790 181 YIDDEGK|KV 0.078 . PVX_094790 182 IDDEGKK|VE 0.080 . PVX_094790 219 QAVELAR|NA 0.082 . PVX_094790 228 IYHATFR|DG 0.149 . PVX_094790 235 DGGSGGK|VR 0.050 . PVX_094790 237 GSGGKVR|VF 0.097 . PVX_094790 243 RVFYIHK|NG 0.059 . PVX_094790 248 HKNGYDK|II 0.079 . ____________________________^_________________

  • Fasta :-

    >PVX_094790 ATGGCAGAAAGGGGGGGGTGCCTGATGAGCGAAATTGACAATTTAATCAATGACGTGGAG GAGGAGGGAGGAGAAAATTACGACGAGCTGCAATTCTGTGTAGCTCCAGTAACAGTCCCA AGAAATTTCATAAAAGATACCAAGACAAAATGTAGCAACAACAAACTGTTTGATTTTCAC AAAGGTACAACTACACTGGCCTTCAAATTTAAGGAGGGAATAATTGTGGCTGTGGATTCT AGAGCCTCCATGGGTTCCTTCATATCTTCACAAAATGTAGAGAAAATTATCGAAATAAAT AAAAACATCTTAGGGACCATGGCAGGAGGAGCGGCAGACTGTTTATATTGGGAAAAATAT TTGGGAAAAATTATAAAAATTTATGAATTGAGAAATAATGAGAAAATCTCTGTCCGAGCA GCCAGCACCATTTTAAGTAATATTTTATACCAATATAAGGGGTATGGGTTATGCTGTGGA ATCATCTTAAGTGGTTATGATCACACCGGTTTTAATATGTTTTACATTGATGATGAGGGG AAGAAAGTGGAGGGGAATTTATTTAGTTGCGGAAGTGGTAGCACTTATGCCTACTCCATT TTGGACTCTGCCTATGATTACAATTTGAGTCTGGAGCAAGCCGTGGAACTGGCCAGGAAT GCAATTTATCACGCCACCTTCAGGGATGGAGGCTCCGGTGGGAAGGTTCGAGTTTTTTAC ATACACAAGAATGGCTACGACAAAATTATCGAGGGGCAGGATGTGTACGAGCTGCATTAT CATTACACGAACCCGGCGCAGAACGACCAGCACGTTATGTAG
  • Download Fasta

  • Fasta :-

    MAERGGCLMSEIDNLINDVEEEGGENYDELQFCVAPVTVPRNFIKDTKTKCSNNKLFDFH KGTTTLAFKFKEGIIVAVDSRASMGSFISSQNVEKIIEINKNILGTMAGGAADCLYWEKY LGKIIKIYELRNNEKISVRAASTILSNILYQYKGYGLCCGIILSGYDHTGFNMFYIDDEG KKVEGNLFSCGSGSTYAYSILDSAYDYNLSLEQAVELARNAIYHATFRDGGSGGKVRVFY IHKNGYDKIIEGQDVYELHYHYTNPAQNDQHVM

  • title: active site
  • coordinates: T63,D79,R81,K95,S192,D229,S232,G233
No Results
No Results
No Results
PVX_094790      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India