PVX_114055 | rhomboid protease ROM10, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PVX_114055OTHER0.9999690.0000050.000026
No Results

  • Fasta :-

    >PVX_114055 MNFFSNANNSKASKSRDGNMLTCKYTRCFNKTFKKDITFIQILFPSFTVKSITTAFFVLL FVTFFILNVCNFDRQAPLYLSETVLKRSGMSRNSVTNNHQYYKLLTATFFHASVWNLIIN AYYFMNIGIIVEKSYGKARYITIMLLSALCGNFLLCATSNCGDAYMGISTILSGFMGLFL QEIVERYKQLTDRWSVIGNYVFAVLSLYLTISMFPFNGNIVGNLGGIFGGFCYPYLTKKD TFHGQEKKVKLTLAVLLILLLSSTLISLIVAKC
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_114055.fa Sequence name : PVX_114055 Sequence length : 273 VALUES OF COMPUTED PARAMETERS Coef20 : 3.959 CoefTot : -1.179 ChDiff : 15 ZoneTo : 72 KR : 9 DE : 2 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.594 2.776 0.503 0.858 MesoH : 0.637 0.964 -0.022 0.432 MuHd_075 : 39.842 23.787 11.820 7.878 MuHd_095 : 46.326 21.650 11.803 10.283 MuHd_100 : 45.872 23.933 11.883 10.584 MuHd_105 : 45.973 22.554 11.572 9.417 Hmax_075 : 19.600 20.200 4.677 6.540 Hmax_095 : 13.700 9.500 2.974 3.937 Hmax_100 : 12.900 9.100 0.859 4.510 Hmax_105 : 11.200 24.733 2.464 4.725 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8483 0.1517 DFMC : 0.5711 0.4289
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 273 PVX_114055 MNFFSNANNSKASKSRDGNMLTCKYTRCFNKTFKKDITFIQILFPSFTVKSITTAFFVLLFVTFFILNVCNFDRQAPLYL 80 SETVLKRSGMSRNSVTNNHQYYKLLTATFFHASVWNLIINAYYFMNIGIIVEKSYGKARYITIMLLSALCGNFLLCATSN 160 CGDAYMGISTILSGFMGLFLQEIVERYKQLTDRWSVIGNYVFAVLSLYLTISMFPFNGNIVGNLGGIFGGFCYPYLTKKD 240 TFHGQEKKVKLTLAVLLILLLSSTLISLIVAKC 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_114055 11 SNANNSK|AS 0.064 . PVX_114055 14 NNSKASK|SR 0.100 . PVX_114055 16 SKASKSR|DG 0.114 . PVX_114055 24 GNMLTCK|YT 0.075 . PVX_114055 27 LTCKYTR|CF 0.084 . PVX_114055 31 YTRCFNK|TF 0.066 . PVX_114055 34 CFNKTFK|KD 0.064 . PVX_114055 35 FNKTFKK|DI 0.153 . PVX_114055 50 FPSFTVK|SI 0.142 . PVX_114055 74 NVCNFDR|QA 0.096 . PVX_114055 86 LSETVLK|RS 0.070 . PVX_114055 87 SETVLKR|SG 0.177 . PVX_114055 92 KRSGMSR|NS 0.131 . PVX_114055 103 NNHQYYK|LL 0.072 . PVX_114055 133 IGIIVEK|SY 0.101 . PVX_114055 137 VEKSYGK|AR 0.058 . PVX_114055 139 KSYGKAR|YI 0.169 . PVX_114055 186 LQEIVER|YK 0.083 . PVX_114055 188 EIVERYK|QL 0.060 . PVX_114055 193 YKQLTDR|WS 0.094 . PVX_114055 238 CYPYLTK|KD 0.054 . PVX_114055 239 YPYLTKK|DT 0.169 . PVX_114055 247 TFHGQEK|KV 0.075 . PVX_114055 248 FHGQEKK|VK 0.073 . PVX_114055 250 GQEKKVK|LT 0.075 . PVX_114055 272 ISLIVAK|C- 0.070 . ____________________________^_________________

  • Fasta :-

    >PVX_114055 ATGAACTTCTTCTCAAACGCCAATAACTCCAAGGCTAGCAAGTCAAGAGATGGCAACATG CTGACGTGTAAATACACTCGGTGCTTTAACAAGACGTTTAAGAAGGACATCACGTTCATT CAGATTTTGTTTCCGTCCTTTACTGTGAAGAGCATCACGACTGCCTTTTTCGTGCTCCTA TTTGTTACCTTCTTCATTTTGAACGTGTGCAACTTTGACAGGCAGGCGCCGCTCTACCTG AGCGAAACTGTGCTGAAGCGATCTGGCATGAGCAGGAACTCCGTCACGAACAACCACCAG TACTACAAACTGTTGACGGCCACTTTTTTCCACGCCAGCGTTTGGAACTTAATAATTAAT GCCTACTATTTCATGAACATCGGGATCATCGTCGAGAAGAGCTACGGGAAGGCTCGATAC ATTACGATAATGCTTCTAAGTGCCCTGTGTGGGAACTTCCTCCTCTGCGCAACTTCCAAT TGTGGCGACGCCTACATGGGCATCAGCACAATCTTGTCCGGATTCATGGGCCTCTTTCTG CAGGAAATCGTTGAGCGGTACAAGCAGCTGACGGACAGGTGGAGCGTCATCGGGAACTAC GTGTTTGCAGTGCTGTCCCTCTATTTGACCATATCGATGTTTCCCTTTAATGGAAACATC GTGGGGAACCTGGGGGGGATTTTCGGCGGCTTCTGCTACCCGTACCTCACCAAAAAGGAC ACCTTCCACGGGCAGGAGAAGAAGGTGAAGCTTACCCTCGCCGTTTTGCTGATTCTGCTT CTGAGTTCAACCCTCATCAGTTTGATCGTGGCCAAGTGTTAG
  • Download Fasta

  • Fasta :-

    MNFFSNANNSKASKSRDGNMLTCKYTRCFNKTFKKDITFIQILFPSFTVKSITTAFFVLL FVTFFILNVCNFDRQAPLYLSETVLKRSGMSRNSVTNNHQYYKLLTATFFHASVWNLIIN AYYFMNIGIIVEKSYGKARYITIMLLSALCGNFLLCATSNCGDAYMGISTILSGFMGLFL QEIVERYKQLTDRWSVIGNYVFAVLSLYLTISMFPFNGNIVGNLGGIFGGFCYPYLTKKD TFHGQEKKVKLTLAVLLILLLSSTLISLIVAKC

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PVX_11405594 SMSRNSVTNN0.994unspPVX_114055237 TYPYLTKKDT0.991unsp
PVX_114055      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India