PVX_114470 | E3 ubiquitin-protein ligase RNF5, putative

UniProt_ID: A5K2A5

Computed_GO_Component_IDs: GO:0000151
Computed_GO_Components: ubiquitin ligase complex
Computed_GO_Function_IDs: GO:0004842 GO:0008270
Computed_GO_Functions: ubiquitin-protein transferase activity zinc ion binding
Computed_GO_Process_IDs: GO:0016567
Computed_GO_Processes: protein ubiquitination
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	PVX_114470	OTHER	0.999998	0.000001	0.000000

No Results

Fasta :-
>PVX_114470 MNEKENEYDSLYDVIYDYDVNEEFLKGKDNVQSANPVLCDIKSKLTAKGESESVAEPSGT AHPSDVANDEKEENASPLSSIRLSDKNGDCAGVGEMEILLTPQKNTPDSANESGISSDNV GHFEKTEELPFLKSNTQRNDSGSAGDSNSKVVPREEAKIVNPEEGGNHSPDGCSLPAEEG DASVSSASTHVVGITSCENCSKEKDRHMRLLSTDWQSTYSSHDVTVGKNYNNVVNRKNRL GEGAPKEQGTRAERSQTDEAKDEETHHSNDVMIKDRGVKEKYKKLRFEDDIYKENADGKA EATNGQDPNQGETNKMEEKSPISKDNQNVEPTNANNTSEEKNKTEENAKKNTTSENDGRS TFECNICFDDVRDPVVTKCGHLFCWLCLCAWIKKNNDCPVCKAEVSRENVIPLYGRGKNS SEHKYSNVEEPRPTPKRKESVRRNNGYSNNLGLRASFGVWVNPFSFGMSYTNMSEEPYFY ESGGGDNRTQAETYQAEAASSFFFFLGFFLSLYILFYSS
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_114470.fa Sequence name : PVX_114470 Sequence length : 519 VALUES OF COMPUTED PARAMETERS Coef20 : 2.567 CoefTot : -0.134 ChDiff : -28 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.488 2.071 0.345 0.873 MesoH : -0.162 0.009 -0.354 0.241 MuHd_075 : 32.354 18.843 7.739 4.305 MuHd_095 : 24.900 16.517 6.875 4.578 MuHd_100 : 29.388 19.340 7.554 5.462 MuHd_105 : 28.821 19.188 7.032 5.573 Hmax_075 : -3.617 3.267 -3.174 1.680 Hmax_095 : -1.600 3.400 -2.424 2.420 Hmax_100 : -1.600 2.500 -2.424 2.420 Hmax_105 : -5.687 3.850 -3.289 2.205 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9868 0.0132 DFMC : 0.9782 0.0218

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 519 PVX_114470 MNEKENEYDSLYDVIYDYDVNEEFLKGKDNVQSANPVLCDIKSKLTAKGESESVAEPSGTAHPSDVANDEKEENASPLSS 80 IRLSDKNGDCAGVGEMEILLTPQKNTPDSANESGISSDNVGHFEKTEELPFLKSNTQRNDSGSAGDSNSKVVPREEAKIV 160 NPEEGGNHSPDGCSLPAEEGDASVSSASTHVVGITSCENCSKEKDRHMRLLSTDWQSTYSSHDVTVGKNYNNVVNRKNRL 240 GEGAPKEQGTRAERSQTDEAKDEETHHSNDVMIKDRGVKEKYKKLRFEDDIYKENADGKAEATNGQDPNQGETNKMEEKS 320 PISKDNQNVEPTNANNTSEEKNKTEENAKKNTTSENDGRSTFECNICFDDVRDPVVTKCGHLFCWLCLCAWIKKNNDCPV 400 CKAEVSRENVIPLYGRGKNSSEHKYSNVEEPRPTPKRKESVRRNNGYSNNLGLRASFGVWVNPFSFGMSYTNMSEEPYFY 480 ESGGGDNRTQAETYQAEAASSFFFFLGFFLSLYILFYSS 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ....................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_114470 4 ---MNEK|EN 0.056 . PVX_114470 26 VNEEFLK|GK 0.068 . PVX_114470 28 EEFLKGK|DN 0.073 . PVX_114470 42 PVLCDIK|SK 0.064 . PVX_114470 44 LCDIKSK|LT 0.076 . PVX_114470 48 KSKLTAK|GE 0.075 . PVX_114470 71 DVANDEK|EE 0.063 . PVX_114470 82 SPLSSIR|LS 0.104 . PVX_114470 86 SIRLSDK|NG 0.073 . PVX_114470 104 ILLTPQK|NT 0.058 . PVX_114470 125 NVGHFEK|TE 0.056 . PVX_114470 133 EELPFLK|SN 0.071 . PVX_114470 138 LKSNTQR|ND 0.146 . PVX_114470 150 AGDSNSK|VV 0.061 . PVX_114470 154 NSKVVPR|EE 0.105 . PVX_114470 158 VPREEAK|IV 0.103 . PVX_114470 202 SCENCSK|EK 0.065 . PVX_114470 204 ENCSKEK|DR 0.070 . PVX_114470 206 CSKEKDR|HM 0.090 . PVX_114470 209 EKDRHMR|LL 0.322 . PVX_114470 228 HDVTVGK|NY 0.068 . PVX_114470 236 YNNVVNR|KN 0.130 . PVX_114470 237 NNVVNRK|NR 0.072 . PVX_114470 239 VVNRKNR|LG 0.310 . PVX_114470 246 LGEGAPK|EQ 0.062 . PVX_114470 251 PKEQGTR|AE 0.074 . PVX_114470 254 QGTRAER|SQ 0.299 . PVX_114470 261 SQTDEAK|DE 0.080 . PVX_114470 274 SNDVMIK|DR 0.092 . PVX_114470 276 DVMIKDR|GV 0.143 . PVX_114470 279 IKDRGVK|EK 0.123 . PVX_114470 281 DRGVKEK|YK 0.076 . PVX_114470 283 GVKEKYK|KL 0.067 . PVX_114470 284 VKEKYKK|LR 0.075 . PVX_114470 286 EKYKKLR|FE 0.157 . PVX_114470 293 FEDDIYK|EN 0.058 . PVX_114470 299 KENADGK|AE 0.069 . PVX_114470 315 NQGETNK|ME 0.069 . PVX_114470 319 TNKMEEK|SP 0.079 . PVX_114470 324 EKSPISK|DN 0.091 . PVX_114470 341 NNTSEEK|NK 0.055 . PVX_114470 343 TSEEKNK|TE 0.075 . PVX_114470 349 KTEENAK|KN 0.069 . PVX_114470 350 TEENAKK|NT 0.118 . PVX_114470 359 TSENDGR|ST 0.154 . PVX_114470 372 ICFDDVR|DP 0.077 . PVX_114470 378 RDPVVTK|CG 0.057 . PVX_114470 393 CLCAWIK|KN 0.064 . PVX_114470 394 LCAWIKK|NN 0.082 . PVX_114470 402 NDCPVCK|AE 0.062 . PVX_114470 407 CKAEVSR|EN 0.090 . PVX_114470 416 VIPLYGR|GK 0.086 . PVX_114470 418 PLYGRGK|NS 0.064 . PVX_114470 424 KNSSEHK|YS 0.092 . PVX_114470 432 SNVEEPR|PT 0.092 . PVX_114470 436 EPRPTPK|RK 0.072 . PVX_114470 437 PRPTPKR|KE 0.171 . PVX_114470 438 RPTPKRK|ES 0.094 . PVX_114470 442 KRKESVR|RN 0.095 . PVX_114470 443 RKESVRR|NN 0.196 . PVX_114470 454 SNNLGLR|AS 0.096 . PVX_114470 488 SGGGDNR|TQ 0.069 . ____________________________^_________________

Fasta :-
>PVX_114470 ATGCCAAAAAATTACATACATGTTTTATTATATATTCTGTTAAATGCACGTTGCCATTTA AGAGGGAAAATAAAAAGAAAAAAAAGTTAAAATAAATTAAAAACAGCATTTTGATCATTT TTTACAAGTTAAAGCAAAACAGTCAATTTTTTCGCTTCCCCTCGTGCTGCGTTCTGTTTT GACATCCGCGAGGGGCATATTGTAATATGCGTTACTTTATTTATGTATGCAAGAAAAAAT GTATTCATTCAATACAGAGACGTACATAATTACATATACATGTTAGCCCTTTTTTGCCGC TTTTGTTTTTTTTGTAAAACAATCATTTTACCCTTTCGAGTTTAAAACCAGTCAATCATT CCTTGCGAGAATCACCCACGTATACGATAGTGGAAGTATACAATATCGCGAAGAAATGTT TGCGCGTAAATCATTTTTTTCTTTAACAAAACGAATTGCTTAATTCAATTAGACCAGAAA AAGGGAGAAAAAAAAAAAACTTCCGCATTTAAACGAGGAAGAATATACATACGTACATAT TTCATATATAGTAATATATGCATGACTCTTTTCAGAAGATAGAGAAACAAAAAAAAGAAA AATCGCGTTGTTTTTTTAAAAATGATTAAACGAAAGCCCAAAAATGAATGAAAAAGAAAA CGAATATGATTCGCTGTACGATGTAATATACGATTATGACGTTAACGAAGAATTCCTCAA GGGGAAGGACAACGTTCAGTCTGCAAATCCGGTGCTCTGTGACATAAAAAGTAAGTTAAC CGCCAAGGGAGAAAGCGAAAGCGTGGCGGAGCCTTCGGGAACTGCTCACCCAAGTGATGT AGCAAATGATGAAAAGGAAGAAAACGCATCACCCTTATCTTCCATACGGTTAAGCGATAA AAATGGCGATTGTGCAGGGGTAGGGGAAATGGAGATTCTACTAACACCTCAGAAGAACAC CCCAGACAGTGCTAACGAGAGCGGAATCAGCTCCGATAACGTGGGCCATTTTGAAAAAAC GGAAGAACTGCCCTTCTTAAAAAGTAACACACAGCGTAATGATAGTGGCAGCGCTGGGGA TAGCAATTCCAAAGTGGTACCAAGGGAGGAGGCCAAAATTGTGAACCCCGAAGAAGGGGG AAACCACTCCCCAGATGGTTGTTCATTACCAGCTGAGGAAGGAGACGCATCGGTAAGTAG CGCCTCTACACATGTAGTGGGAATAACCAGCTGCGAAAATTGCAGTAAAGAGAAGGATCG CCATATGAGGCTACTATCAACCGACTGGCAGAGCACATACAGCTCGCACGACGTTACTGT AGGGAAAAATTATAACAACGTAGTGAACCGAAAGAACAGATTAGGAGAAGGTGCCCCCAA GGAGCAGGGAACTAGAGCGGAGCGGTCCCAGACTGATGAGGCAAAAGACGAGGAAACACA TCACAGTAACGACGTTATGATAAAAGATCGGGGGGTAAAGGAAAAATACAAAAAACTTAG ATTTGAAGATGATATATATAAGGAAAATGCAGATGGAAAAGCAGAGGCAACAAATGGGCA AGACCCAAATCAGGGAGAAACAAACAAAATGGAAGAAAAAAGCCCCATTAGTAAAGACAA CCAAAATGTAGAACCCACTAATGCTAATAACACCTCGGAGGAAAAAAACAAAACTGAAGA AAATGCCAAGAAAAACACAACATCAGAAAATGATGGCAGAAGTACATTCGAATGTAACAT CTGTTTTGATGATGTGAGAGACCCAGTGGTGACGAAATGTGGGCATCTGTTCTGTTGGTT ATGTCTCTGCGCTTGGATTAAAAAAAATAATGACTGCCCTGTCTGCAAAGCTGAAGTTTC AAGGGAAAATGTAATACCCCTGTACGGAAGGGGCAAGAATAGCAGCGAACATAAGTATTC GAATGTGGAAGAACCCAGACCCACTCCCAAAAGGAAAGAAAGCGTCAGGAGAAATAATGG CTATTCTAACAACCTAGGGTTAAGGGCTTCCTTTGGCGTTTGGGTGAACCCCTTCTCCTT TGGAATGTCCTACACCAACATGTCAGAAGAGCCCTACTTCTACGAAAGCGGTGGTGGCGA CAACAGAACCCAGGCGGAAACGTATCAAGCGGAAGCCGCATCTTCCTTTTTCTTTTTCCT GGGCTTTTTTCTGTCCCTCTATATTTTGTTCTACTCGTCCTAG
Download Fasta

Fasta :-

MNEKENEYDSLYDVIYDYDVNEEFLKGKDNVQSANPVLCDIKSKLTAKGESESVAEPSGT AHPSDVANDEKEENASPLSSIRLSDKNGDCAGVGEMEILLTPQKNTPDSANESGISSDNV GHFEKTEELPFLKSNTQRNDSGSAGDSNSKVVPREEAKIVNPEEGGNHSPDGCSLPAEEG DASVSSASTHVVGITSCENCSKEKDRHMRLLSTDWQSTYSSHDVTVGKNYNNVVNRKNRL GEGAPKEQGTRAERSQTDEAKDEETHHSNDVMIKDRGVKEKYKKLRFEDDIYKENADGKA EATNGQDPNQGETNKMEEKSPISKDNQNVEPTNANNTSEEKNKTEENAKKNTTSENDGRS TFECNICFDDVRDPVVTKCGHLFCWLCLCAWIKKNNDCPVCKAEVSRENVIPLYGRGKNS SEHKYSNVEEPRPTPKRKESVRRNNGYSNNLGLRASFGVWVNPFSFGMSYTNMSEEPYFY ESGGGDNRTQAETYQAEAASSFFFFLGFFLSLYILFYSS

RING finger domain, C3HC4

title: Zn binding site
coordinates: C364,C367,C379,H381,C384,C387,C398,C401

	ID	Site	Position	Gscore	Iscore
	PVX_114470	T	60	0.513	0.266

	ID	Site	Position	Gscore	Iscore
	PVX_114470	T	60	0.513	0.266

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	PVX_114470	141 S	QRNDSGSAG	0.997	unsp	PVX_114470	141 S	QRNDSGSAG	0.997	unsp	PVX_114470	141 S	QRNDSGSAG	0.997	unsp	PVX_114470	143 S	NDSGSAGDS	0.994	unsp	PVX_114470	255 S	RAERSQTDE	0.996	unsp	PVX_114470	292 Y	EDDIYKENA	0.991	unsp	PVX_114470	320 S	MEEKSPISK	0.99	unsp	PVX_114470	354 S	KNTTSENDG	0.995	unsp	PVX_114470	434 T	EPRPTPKRK	0.994	unsp	PVX_114470	440 S	KRKESVRRN	0.996	unsp	PVX_114470	84 S	SIRLSDKNG	0.998	unsp	PVX_114470	109 S	NTPDSANES	0.991	unsp

PVX_114470

PVX_114470 | E3 ubiquitin-protein ligase RNF5, putative

ID's

UniProt_ID: A5K2A5

GEO Functions

Computed_GO_Component_IDs: GO:0000151

Computed_GO_Components: ubiquitin ligase complex

Computed_GO_Function_IDs: GO:0004842 GO:0008270

Computed_GO_Functions: ubiquitin-protein transferase activity zinc ion binding

Computed_GO_Process_IDs: GO:0016567

Computed_GO_Processes: protein ubiquitination

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

RING finger domain, C3HC4

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India