PVX_114890 | rhomboid protease ROM7, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_114890SP0.0105610.9697060.019732CS pos: 18-19. GNA-FL. Pr: 0.9117
No Results

  • Fasta :-

    >PVX_114890 MNLLTLLAIATCLTRGNAFLYKRIHYKRTGHGRISDRPTAILYDHALHVVHKKKGVKKIY SLKRHVSEIWNNIKTRRIENYMEDFFQTQQVKNTLQNNFLCFRHLFNKCKLDRVIIAVNV ALYLYLNRIDKDDERRIFFHKGNLLEVKEQKAEKYKCNYHDIYRTKNFKTFFTSLFIHKN ILHLYFNMSSLISIYKLISLIYTNSQIFVTFLLSGVLSNIIAYIYYLREKKENVLLENLI LKNTSSENNLLINKNNKIICGSSSCIYSLYGMHMTYIIFFYFKHNYIVNSNFLYNFFYSF VSSLLLENVSHLNHVLGFLCGFFFSSLIVLFDRNG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_114890.fa Sequence name : PVX_114890 Sequence length : 335 VALUES OF COMPUTED PARAMETERS Coef20 : 4.825 CoefTot : -0.229 ChDiff : 23 ZoneTo : 35 KR : 6 DE : 0 CleavSite : 17 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.541 2.482 0.525 0.876 MesoH : 0.788 0.912 -0.091 0.466 MuHd_075 : 43.161 24.405 11.183 9.565 MuHd_095 : 26.042 20.831 8.217 7.648 MuHd_100 : 24.587 20.931 7.652 6.923 MuHd_105 : 21.114 17.272 5.542 6.226 Hmax_075 : 11.900 11.300 0.880 5.130 Hmax_095 : 10.000 15.200 3.166 4.909 Hmax_100 : 9.600 14.500 2.405 5.320 Hmax_105 : 18.900 21.350 5.233 7.443 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0590 0.9410 DFMC : 0.1775 0.8225 This protein is probably imported in mitochondria. f(Ser) = 0.0286 f(Arg) = 0.1143 CMi = 0.12422 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 335 PVX_114890 MNLLTLLAIATCLTRGNAFLYKRIHYKRTGHGRISDRPTAILYDHALHVVHKKKGVKKIYSLKRHVSEIWNNIKTRRIEN 80 YMEDFFQTQQVKNTLQNNFLCFRHLFNKCKLDRVIIAVNVALYLYLNRIDKDDERRIFFHKGNLLEVKEQKAEKYKCNYH 160 DIYRTKNFKTFFTSLFIHKNILHLYFNMSSLISIYKLISLIYTNSQIFVTFLLSGVLSNIIAYIYYLREKKENVLLENLI 240 LKNTSSENNLLINKNNKIICGSSSCIYSLYGMHMTYIIFFYFKHNYIVNSNFLYNFFYSFVSSLLLENVSHLNHVLGFLC 320 GFFFSSLIVLFDRNG 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_114890 15 IATCLTR|GN 0.069 . PVX_114890 22 GNAFLYK|RI 0.077 . PVX_114890 23 NAFLYKR|IH 0.130 . PVX_114890 27 YKRIHYK|RT 0.096 . PVX_114890 28 KRIHYKR|TG 0.204 . PVX_114890 33 KRTGHGR|IS 0.111 . PVX_114890 37 HGRISDR|PT 0.102 . PVX_114890 52 ALHVVHK|KK 0.080 . PVX_114890 53 LHVVHKK|KG 0.106 . PVX_114890 54 HVVHKKK|GV 0.221 . PVX_114890 57 HKKKGVK|KI 0.065 . PVX_114890 58 KKKGVKK|IY 0.146 . PVX_114890 63 KKIYSLK|RH 0.057 . PVX_114890 64 KIYSLKR|HV 0.389 . PVX_114890 74 EIWNNIK|TR 0.059 . PVX_114890 76 WNNIKTR|RI 0.159 . PVX_114890 77 NNIKTRR|IE 0.149 . PVX_114890 92 FQTQQVK|NT 0.058 . PVX_114890 103 NNFLCFR|HL 0.079 . PVX_114890 108 FRHLFNK|CK 0.063 . PVX_114890 110 HLFNKCK|LD 0.069 . PVX_114890 113 NKCKLDR|VI 0.104 . PVX_114890 128 LYLYLNR|ID 0.072 . PVX_114890 131 YLNRIDK|DD 0.158 . PVX_114890 135 IDKDDER|RI 0.079 . PVX_114890 136 DKDDERR|IF 0.128 . PVX_114890 141 RRIFFHK|GN 0.070 . PVX_114890 148 GNLLEVK|EQ 0.058 . PVX_114890 151 LEVKEQK|AE 0.059 . PVX_114890 154 KEQKAEK|YK 0.068 . PVX_114890 156 QKAEKYK|CN 0.074 . PVX_114890 164 NYHDIYR|TK 0.074 . PVX_114890 166 HDIYRTK|NF 0.070 . PVX_114890 169 YRTKNFK|TF 0.071 . PVX_114890 179 TSLFIHK|NI 0.062 . PVX_114890 196 SLISIYK|LI 0.067 . PVX_114890 228 AYIYYLR|EK 0.066 . PVX_114890 230 IYYLREK|KE 0.060 . PVX_114890 231 YYLREKK|EN 0.140 . PVX_114890 242 LENLILK|NT 0.066 . PVX_114890 254 NNLLINK|NN 0.054 . PVX_114890 257 LINKNNK|II 0.073 . PVX_114890 283 IIFFYFK|HN 0.069 . PVX_114890 333 LIVLFDR|NG 0.078 . ____________________________^_________________

  • Fasta :-

    >PVX_114890 CCCCCCAGATTCAAAGGTTAACAATTAAACTAATCTGCTTACATGTATTACGTACACATA TGCATGCGACTGTGCGTACGTACAGGTATGTATCTACCTGCCCAGCCGTAGGGATGCTCC CTCGTGTTGTTCCAATTTGTGCATTCCCGCCCTTTGCGTGCTTGCCATAACGCGGCAGCA CACTGTGCCGACCGTTGCGCGGTTTAGCAAAACTGGCAAGCAGAGCGCCTCCCCCAACGC GGCCAAGCTAGGGGGGCCGACAGTGTACCCACGAATAGCGTCCCCACTGTGGGCAACCTG GGCAGACGTGTGGACAGGCATTTTCCCACTCGCCTCTACCCCCCCTGGCGCAACACTGCA TAGCCGCAATACATTTTTGCACAACTTCAACGTTGCAAGAATGTGCGCAGGCGTACCGCC AATTCGCTGCACCCCAACTTGCTATACTAACGCGCTGTCACATGGCTTGAAAAAGCGTCT CCATGGGCCTCGTTAAAAAGGGATGCCACGTGCAGGCACAACCGAGGCTACGGAGAAGCA TACCATTCGCTGCATCCACCCGAGCGTTTAACTGGCCTCCCCGCTGAGCCCCCCAACGCG AGGGGACATCACTGCGGCGAAGGATGAACCTTCTAACCTTACTCGCAATCGCAACGTGCC TTACGAGAGGAAACGCATTTCTGTACAAACGGATCCACTACAAGCGGACAGGCCATGGGC GAATAAGCGATAGACCCACGGCCATACTGTATGACCATGCCCTTCACGTAGTCCACAAGA AAAAGGGAGTAAAAAAAATTTACTCCTTAAAGAGACACGTATCAGAAATATGGAATAACA TTAAAACGAGGAGGATAGAAAATTATATGGAAGATTTTTTTCAAACGCAGCAAGTGAAGA ATACTCTTCAAAATAACTTTCTCTGTTTTAGGCACCTATTTAATAAGTGTAAACTGGACA GAGTAATTATAGCGGTTAATGTGGCCCTGTATTTGTACTTGAACAGAATTGATAAGGATG ATGAGAGGAGGATTTTTTTTCACAAGGGGAATTTATTGGAGGTGAAAGAACAAAAGGCAG AAAAGTATAAATGCAATTATCACGATATTTACAGAACAAAAAATTTTAAAACGTTTTTCA CTTCCCTTTTTATTCACAAGAATATTTTGCATTTATATTTTAACATGAGTTCGCTAATTT CCATATATAAATTAATTTCCCTCATTTACACGAACAGCCAAATATTTGTTACATTCCTCC TGTCAGGTGTGCTGTCCAACATCATAGCGTATATTTATTACTTGCGAGAAAAAAAAGAAA ATGTACTTTTGGAAAATTTAATTTTAAAAAATACTTCCAGTGAAAATAATCTCCTTATAA ATAAAAATAATAAAATTATCTGTGGAAGTAGTTCCTGCATTTATTCGCTTTACGGAATGC ATATGACTTATATTATATTTTTTTACTTTAAGCATAATTATATTGTGAACAGCAATTTTT TGTACAATTTTTTTTATTCATTCGTTTCTTCTTTGCTGCTCGAGAATGTCAGTCACTTGA ACCACGTGTTGGGCTTCCTCTGTGGTTTTTTCTTCTCCTCCCTCATAGTGCTCTTTGACA GGAATGGCTAG
  • Download Fasta

  • Fasta :-

    MNLLTLLAIATCLTRGNAFLYKRIHYKRTGHGRISDRPTAILYDHALHVVHKKKGVKKIY SLKRHVSEIWNNIKTRRIENYMEDFFQTQQVKNTLQNNFLCFRHLFNKCKLDRVIIAVNV ALYLYLNRIDKDDERRIFFHKGNLLEVKEQKAEKYKCNYHDIYRTKNFKTFFTSLFIHKN ILHLYFNMSSLISIYKLISLIYTNSQIFVTFLLSGVLSNIIAYIYYLREKKENVLLENLI LKNTSSENNLLINKNNKIICGSSSCIYSLYGMHMTYIIFFYFKHNYIVNSNFLYNFFYSF VSSLLLENVSHLNHVLGFLCGFFFSSLIVLFDRNG

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PVX_11489035 SHGRISDRPT0.995unspPVX_114890245 SLKNTSSENN0.99unsp
PVX_114890      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India