PVX_116925 | proteasome subunit beta type-2, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_116925OTHER0.9908430.0088690.000288
No Results

  • Fasta :-

    >PVX_116925 MDTLIGLKGKNFIILAVDTYSVNSIIKLKNDDKTKFYDINGNKCLLLGGSIGDRIQFGEF IRKNVHLYQYQNSTDLFVKSFAFFTRKNLAYYLRRNPYEVNCLIAGYDNKDGYQLYWCDY LSNMDAVNKGAHGYGAYLVNGILDKYYHENMNLEEALLIFKKCFEELKKRFLLTQINYEL RIMADNKIEAQYVTI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_116925.fa Sequence name : PVX_116925 Sequence length : 195 VALUES OF COMPUTED PARAMETERS Coef20 : 3.734 CoefTot : -0.591 ChDiff : 3 ZoneTo : 17 KR : 2 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.435 1.418 -0.043 0.499 MesoH : -1.312 -0.050 -0.573 0.110 MuHd_075 : 6.145 4.304 2.101 0.914 MuHd_095 : 21.558 12.602 5.106 4.028 MuHd_100 : 11.035 5.028 3.312 2.344 MuHd_105 : 9.900 3.953 3.846 1.019 Hmax_075 : 5.367 15.633 1.625 5.693 Hmax_095 : 8.662 14.700 1.181 5.197 Hmax_100 : 8.600 14.700 0.947 4.840 Hmax_105 : 5.000 14.467 0.653 4.680 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9947 0.0053 DFMC : 0.9955 0.0045
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 195 PVX_116925 MDTLIGLKGKNFIILAVDTYSVNSIIKLKNDDKTKFYDINGNKCLLLGGSIGDRIQFGEFIRKNVHLYQYQNSTDLFVKS 80 FAFFTRKNLAYYLRRNPYEVNCLIAGYDNKDGYQLYWCDYLSNMDAVNKGAHGYGAYLVNGILDKYYHENMNLEEALLIF 160 KKCFEELKKRFLLTQINYELRIMADNKIEAQYVTI 240 ................................................................................ 80 ................................................................................ 160 ................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_116925 8 DTLIGLK|GK 0.055 . PVX_116925 10 LIGLKGK|NF 0.063 . PVX_116925 27 SVNSIIK|LK 0.061 . PVX_116925 29 NSIIKLK|ND 0.062 . PVX_116925 33 KLKNDDK|TK 0.060 . PVX_116925 35 KNDDKTK|FY 0.078 . PVX_116925 43 YDINGNK|CL 0.058 . PVX_116925 54 GGSIGDR|IQ 0.084 . PVX_116925 62 QFGEFIR|KN 0.072 . PVX_116925 63 FGEFIRK|NV 0.099 . PVX_116925 79 STDLFVK|SF 0.066 . PVX_116925 86 SFAFFTR|KN 0.091 . PVX_116925 87 FAFFTRK|NL 0.075 . PVX_116925 94 NLAYYLR|RN 0.078 . PVX_116925 95 LAYYLRR|NP 0.107 . PVX_116925 110 IAGYDNK|DG 0.067 . PVX_116925 129 NMDAVNK|GA 0.078 . PVX_116925 145 VNGILDK|YY 0.068 . PVX_116925 161 EALLIFK|KC 0.056 . PVX_116925 162 ALLIFKK|CF 0.092 . PVX_116925 168 KCFEELK|KR 0.054 . PVX_116925 169 CFEELKK|RF 0.065 . PVX_116925 170 FEELKKR|FL 0.233 . PVX_116925 181 QINYELR|IM 0.079 . PVX_116925 187 RIMADNK|IE 0.064 . ____________________________^_________________

  • Fasta :-

    >PVX_116925 CCCTTAAATGTGAAGAAATAAACTGGAGAGGCATAACACTGTTTGTGCGGCTTCACCTTT TTGGCTAACTATATGTGTTACGTTATGGTATCGTATGGTATGGTATGCTTTGCTGTGCTG TGTTTTTTTTTTTTCTTTTTTCCTCCACCAACTGCGCTTTAACCACTGAAAGGTTTTTTC CCCTCCGATATTCTAATCGCCGACGAGATTGCCAGGTTCCCAGTTTGCCTGCCAGGATAA CCCACCAGTGAATCGCCAGCTCCCCCCTTGTTCCCCCCCGCCTGCCGCTCCCCCATGGAT ACGCTAATCGGCCTGAAGGGCAAAAACTTCATCATCCTCGCGGTAGATACGTACAGCGTC AACTCAATTATTAAGCTAAAAAATGACGACAAAACCAAATTTTACGACATTAACGGAAAC AAGTGCCTTCTCCTGGGGGGATCCATCGGGGATAGAATTCAGTTTGGTGAATTCATAAGG AAGAATGTGCACCTGTACCAGTACCAGAACTCCACCGATTTGTTCGTGAAATCGTTTGCC TTTTTCACGCGCAAAAATTTGGCCTACTATTTGAGGAGAAACCCCTACGAGGTCAACTGC CTCATCGCTGGATATGACAACAAGGACGGCTACCAACTCTACTGGTGCGACTACCTTAGC AACATGGACGCGGTGAACAAAGGCGCGCACGGCTACGGTGCATACCTGGTGAACGGTATC CTAGATAAGTACTACCATGAAAATATGAATTTGGAGGAGGCCCTGCTCATTTTTAAAAAG TGCTTTGAAGAATTGAAGAAGAGATTCCTCCTCACGCAGATAAATTACGAGCTGCGAATT ATGGCAGATAACAAGATAGAGGCTCAGTACGTGACCATTTGA
  • Download Fasta

  • Fasta :-

    MDTLIGLKGKNFIILAVDTYSVNSIIKLKNDDKTKFYDINGNKCLLLGGSIGDRIQFGEF IRKNVHLYQYQNSTDLFVKSFAFFTRKNLAYYLRRNPYEVNCLIAGYDNKDGYQLYWCDY LSNMDAVNKGAHGYGAYLVNGILDKYYHENMNLEEALLIFKKCFEELKKRFLLTQINYEL RIMADNKIEAQYVTI

    No Results
No Results
No Results
No Results
PVX_116925      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India