PVX_117040 | derlin-1, putative

  • Computed_GO_Component_IDs:  GO:0016020      

  • Computed_GO_Components:  membrane      

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  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
PVX_117040OTHER0.9997890.0001850.000027
No Results

  • Fasta :-

    >PVX_117040 MVQLGELLSTIPLITRLYLILSSILMVLCSLDVISPLSLYLNWNLVLTEHQYWRLITCFL YFGSFGLHFFWDAYVLIYYCSSLEDVTFRNNSADFLWMIIVSCMMLLAVSYLFGGVYFYS SCIINVITYVWSKNNSSTRLTIFFFTIKASYLPWVLTLLSLIVDYNSNDNFFGILVGHIY FFFTNVFPLMPVAKNTQIFKTPQILKWLLKQEQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_117040.fa Sequence name : PVX_117040 Sequence length : 213 VALUES OF COMPUTED PARAMETERS Coef20 : 4.295 CoefTot : -0.394 ChDiff : 0 ZoneTo : 71 KR : 2 DE : 3 CleavSite : 64 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.335 2.282 0.454 0.782 MesoH : 0.997 1.173 0.050 0.502 MuHd_075 : 24.034 20.073 6.614 5.888 MuHd_095 : 19.697 18.344 5.636 5.318 MuHd_100 : 24.309 20.950 7.089 6.927 MuHd_105 : 31.063 23.720 7.832 7.788 Hmax_075 : 9.683 13.400 -0.241 7.460 Hmax_095 : 12.688 26.687 4.071 7.341 Hmax_100 : 20.600 28.700 4.297 7.290 Hmax_105 : 17.300 23.500 3.561 7.677 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9667 0.0333 DFMC : 0.9488 0.0512
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 213 PVX_117040 MVQLGELLSTIPLITRLYLILSSILMVLCSLDVISPLSLYLNWNLVLTEHQYWRLITCFLYFGSFGLHFFWDAYVLIYYC 80 SSLEDVTFRNNSADFLWMIIVSCMMLLAVSYLFGGVYFYSSCIINVITYVWSKNNSSTRLTIFFFTIKASYLPWVLTLLS 160 LIVDYNSNDNFFGILVGHIYFFFTNVFPLMPVAKNTQIFKTPQILKWLLKQEQ 240 ................................................................................ 80 ................................................................................ 160 ..................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_117040 16 TIPLITR|LY 0.064 . PVX_117040 54 TEHQYWR|LI 0.097 . PVX_117040 89 LEDVTFR|NN 0.102 . PVX_117040 133 ITYVWSK|NN 0.065 . PVX_117040 139 KNNSSTR|LT 0.102 . PVX_117040 148 IFFFTIK|AS 0.053 . PVX_117040 194 PLMPVAK|NT 0.068 . PVX_117040 200 KNTQIFK|TP 0.056 . PVX_117040 206 KTPQILK|WL 0.065 . PVX_117040 210 ILKWLLK|QE 0.061 . ____________________________^_________________

  • Fasta :-

    >PVX_117040 ATGGTTCAGTTGGGCGAGCTCCTCAGCACAATTCCGCTAATAACTCGCTTATACCTCATC CTCTCCTCCATTCTGATGGTCCTATGCTCCCTGGACGTCATATCCCCCTTGAGCTTATAC CTAAATTGGAACTTAGTCTTGACTGAGCATCAGTACTGGAGACTCATCACCTGCTTCTTG TACTTCGGGTCCTTTGGGCTTCATTTCTTTTGGGATGCCTACGTTTTAATATACTACTGC AGCTCACTGGAAGATGTTACCTTTAGGAATAACTCGGCCGACTTCCTCTGGATGATTATT GTGTCCTGCATGATGCTGCTGGCCGTTTCGTACCTTTTCGGGGGGGTGTACTTTTACAGC AGCTGCATAATAAATGTGATCACCTATGTGTGGAGCAAGAACAATTCCTCGACGCGCCTG ACCATTTTTTTTTTCACCATAAAGGCGTCCTACCTGCCGTGGGTGCTAACCTTGCTCTCC CTAATTGTCGACTACAACTCGAATGATAACTTTTTTGGTATTCTAGTGGGACATATCTAC TTCTTCTTCACGAACGTATTCCCCCTCATGCCCGTCGCCAAGAACACGCAAATTTTTAAA ACCCCCCAAATTTTGAAATGGCTGCTCAAGCAGGAGCAGTAA
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  • Fasta :-

    MVQLGELLSTIPLITRLYLILSSILMVLCSLDVISPLSLYLNWNLVLTEHQYWRLITCFL YFGSFGLHFFWDAYVLIYYCSSLEDVTFRNNSADFLWMIIVSCMMLLAVSYLFGGVYFYS SCIINVITYVWSKNNSSTRLTIFFFTIKASYLPWVLTLLSLIVDYNSNDNFFGILVGHIY FFFTNVFPLMPVAKNTQIFKTPQILKWLLKQEQ

    No Results
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PVX_117040      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India