PVX_117180 | aspartyl proteinase, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_117180SP0.0320240.9652490.002728CS pos: 21-22. VKS-AK. Pr: 0.8983
No Results

  • Fasta :-

    >PVX_117180 MNVLLSFFVFLLFNVRPWVKSAKENLRVSRYNTAGISTIVLKGGYINRQFIGEIRIGSPP QAFKVLFDTGSTNLWIPSKNCHTKACQSKRKYDHRVSKNYKSVLKKNPVEVFFGTGKIQI AYVSDDVHLGDIKVKNQEFGVASYISDDPFSDMQFDGLFGLGISDDKRRKTLIYDNIPRG RSKKNVFSIYYPKNVDDDGAITFGGYDKKFIQPNEKIDWFDVSSRKYWAVKMIGLKINGV FLDVCSKNIGGYCEAVIDTGTSSIAGPKDDLILLTRLLNPRRSCHNRALLKRFSFLLSDE NGEQKEYELTPADYIVNSFKVDPVLKSPCNFAFMPINISSANRYLYILGQIFLQKYYAIF EKDKMKIGLAKSV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_117180.fa Sequence name : PVX_117180 Sequence length : 373 VALUES OF COMPUTED PARAMETERS Coef20 : 4.709 CoefTot : -5.018 ChDiff : 18 ZoneTo : 124 KR : 20 DE : 5 CleavSite : 57 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.271 1.876 0.054 0.651 MesoH : -0.703 0.297 -0.407 0.178 MuHd_075 : 32.979 27.038 11.007 8.396 MuHd_095 : 41.497 23.718 12.767 9.833 MuHd_100 : 47.283 23.132 11.169 9.246 MuHd_105 : 51.645 25.838 11.958 10.872 Hmax_075 : 17.033 21.583 -2.100 7.537 Hmax_095 : 3.238 2.200 -2.683 2.260 Hmax_100 : 7.300 20.700 -2.731 3.770 Hmax_105 : 7.300 11.317 0.262 3.770 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4644 0.5356 DFMC : 0.3657 0.6343 This protein is probably imported in mitochondria. f(Ser) = 0.0887 f(Arg) = 0.0565 CMi = 0.59524 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 373 PVX_117180 MNVLLSFFVFLLFNVRPWVKSAKENLRVSRYNTAGISTIVLKGGYINRQFIGEIRIGSPPQAFKVLFDTGSTNLWIPSKN 80 CHTKACQSKRKYDHRVSKNYKSVLKKNPVEVFFGTGKIQIAYVSDDVHLGDIKVKNQEFGVASYISDDPFSDMQFDGLFG 160 LGISDDKRRKTLIYDNIPRGRSKKNVFSIYYPKNVDDDGAITFGGYDKKFIQPNEKIDWFDVSSRKYWAVKMIGLKINGV 240 FLDVCSKNIGGYCEAVIDTGTSSIAGPKDDLILLTRLLNPRRSCHNRALLKRFSFLLSDENGEQKEYELTPADYIVNSFK 320 VDPVLKSPCNFAFMPINISSANRYLYILGQIFLQKYYAIFEKDKMKIGLAKSV 400 ................................................................................ 80 ................................................................................ 160 .......................P........................................................ 240 ................................................................................ 320 ..................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PVX_117180 16 FLLFNVR|PW 0.068 . PVX_117180 20 NVRPWVK|SA 0.091 . PVX_117180 23 PWVKSAK|EN 0.064 . PVX_117180 27 SAKENLR|VS 0.077 . PVX_117180 30 ENLRVSR|YN 0.379 . PVX_117180 42 ISTIVLK|GG 0.065 . PVX_117180 48 KGGYINR|QF 0.100 . PVX_117180 55 QFIGEIR|IG 0.077 . PVX_117180 64 SPPQAFK|VL 0.070 . PVX_117180 79 NLWIPSK|NC 0.066 . PVX_117180 84 SKNCHTK|AC 0.083 . PVX_117180 89 TKACQSK|RK 0.080 . PVX_117180 90 KACQSKR|KY 0.200 . PVX_117180 91 ACQSKRK|YD 0.103 . PVX_117180 95 KRKYDHR|VS 0.090 . PVX_117180 98 YDHRVSK|NY 0.157 . PVX_117180 101 RVSKNYK|SV 0.157 . PVX_117180 105 NYKSVLK|KN 0.059 . PVX_117180 106 YKSVLKK|NP 0.129 . PVX_117180 117 VFFGTGK|IQ 0.058 . PVX_117180 133 VHLGDIK|VK 0.056 . PVX_117180 135 LGDIKVK|NQ 0.069 . PVX_117180 167 LGISDDK|RR 0.052 . PVX_117180 168 GISDDKR|RK 0.154 . PVX_117180 169 ISDDKRR|KT 0.134 . PVX_117180 170 SDDKRRK|TL 0.073 . PVX_117180 179 IYDNIPR|GR 0.089 . PVX_117180 181 DNIPRGR|SK 0.137 . PVX_117180 183 IPRGRSK|KN 0.064 . PVX_117180 184 PRGRSKK|NV 0.563 *ProP* PVX_117180 193 FSIYYPK|NV 0.083 . PVX_117180 208 TFGGYDK|KF 0.059 . PVX_117180 209 FGGYDKK|FI 0.130 . PVX_117180 216 FIQPNEK|ID 0.056 . PVX_117180 225 WFDVSSR|KY 0.091 . PVX_117180 226 FDVSSRK|YW 0.089 . PVX_117180 231 RKYWAVK|MI 0.097 . PVX_117180 236 VKMIGLK|IN 0.066 . PVX_117180 247 FLDVCSK|NI 0.063 . PVX_117180 268 SSIAGPK|DD 0.067 . PVX_117180 276 DLILLTR|LL 0.076 . PVX_117180 281 TRLLNPR|RS 0.086 . PVX_117180 282 RLLNPRR|SC 0.142 . PVX_117180 287 RRSCHNR|AL 0.162 . PVX_117180 291 HNRALLK|RF 0.066 . PVX_117180 292 NRALLKR|FS 0.171 . PVX_117180 305 DENGEQK|EY 0.063 . PVX_117180 320 YIVNSFK|VD 0.055 . PVX_117180 326 KVDPVLK|SP 0.069 . PVX_117180 343 NISSANR|YL 0.118 . PVX_117180 355 GQIFLQK|YY 0.073 . PVX_117180 362 YYAIFEK|DK 0.082 . PVX_117180 364 AIFEKDK|MK 0.064 . PVX_117180 366 FEKDKMK|IG 0.062 . PVX_117180 371 MKIGLAK|SV 0.146 . ____________________________^_________________

  • Fasta :-

    >PVX_117180 ATGAATGTCTTGTTGTCCTTTTTTGTCTTTCTCCTTTTTAATGTTCGCCCGTGGGTGAAA TCTGCAAAAGAGAATTTAAGGGTATCCAGGTATAACACGGCAGGAATTTCCACCATCGTC CTCAAGGGGGGTTACATCAACAGACAATTCATTGGAGAAATACGCATTGGAAGCCCCCCC CAGGCGTTCAAGGTTCTCTTTGATACCGGCAGCACAAATTTGTGGATCCCATCGAAAAAC TGCCACACGAAGGCCTGCCAGAGCAAAAGGAAATACGATCACAGAGTTTCTAAAAATTAC AAATCAGTTCTGAAAAAGAACCCCGTGGAAGTTTTCTTCGGAACAGGCAAAATACAAATC GCTTACGTTTCGGATGATGTTCACTTGGGAGACATTAAGGTAAAAAATCAGGAGTTTGGA GTAGCCAGTTACATATCCGATGACCCTTTTTCGGATATGCAATTCGATGGCCTATTCGGC CTAGGCATTTCAGATGATAAAAGGAGAAAGACGTTGATCTATGACAACATACCGAGGGGC CGGTCCAAAAAAAACGTGTTCTCGATTTACTACCCTAAAAATGTGGACGACGATGGCGCG ATAACCTTCGGGGGATATGATAAAAAATTCATCCAACCCAACGAGAAGATCGACTGGTTT GACGTTTCGTCCAGAAAATACTGGGCAGTCAAAATGATAGGACTGAAAATCAATGGCGTA TTCCTAGACGTGTGTTCCAAAAATATAGGTGGCTACTGCGAAGCAGTCATTGATACAGGC ACGTCGAGCATCGCTGGGCCCAAAGACGACTTAATTTTGTTAACTAGATTACTAAACCCT AGGAGGAGCTGCCACAACAGGGCATTACTAAAAAGGTTTTCTTTCCTTTTAAGTGATGAA AATGGCGAACAAAAGGAATACGAATTAACGCCGGCCGATTACATAGTTAACTCGTTCAAA GTCGACCCTGTTTTGAAGTCCCCCTGCAACTTCGCCTTCATGCCAATTAACATTTCTTCG GCCAATAGATATTTATACATTCTTGGCCAAATATTTTTGCAAAAGTATTATGCAATATTT GAAAAGGACAAAATGAAAATTGGCCTAGCTAAATCGGTGTGA
  • Download Fasta

  • Fasta :-

    MNVLLSFFVFLLFNVRPWVKSAKENLRVSRYNTAGISTIVLKGGYINRQFIGEIRIGSPP QAFKVLFDTGSTNLWIPSKNCHTKACQSKRKYDHRVSKNYKSVLKKNPVEVFFGTGKIQI AYVSDDVHLGDIKVKNQEFGVASYISDDPFSDMQFDGLFGLGISDDKRRKTLIYDNIPRG RSKKNVFSIYYPKNVDDDGAITFGGYDKKFIQPNEKIDWFDVSSRKYWAVKMIGLKINGV FLDVCSKNIGGYCEAVIDTGTSSIAGPKDDLILLTRLLNPRRSCHNRALLKRFSFLLSDE NGEQKEYELTPADYIVNSFKVDPVLKSPCNFAFMPINISSANRYLYILGQIFLQKYYAIF EKDKMKIGLAKSV

    No Results
  • title: catalytic residue
  • coordinates: D68,D258
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PVX_117180182 SPRGRSKKNV0.996unspPVX_117180182 SPRGRSKKNV0.996unspPVX_117180182 SPRGRSKKNV0.996unspPVX_11718021 SPWVKSAKEN0.993unspPVX_11718029 SNLRVSRYNT0.996unsp
PVX_117180      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India