PVX_117435 | ubiquitin carboxyl-terminal hydrolase isozyme L3, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_117435OTHER0.9996780.0000970.000225
No Results

  • Fasta :-

    >PVX_117435 MLRNNVWVPIESNPEALYLYSCKLGQTKLAFQDIYGFDAELLDMIPQPVHAIILLYPLKE GMVTPNAATDGSAEQNIDNIWFIKQVVPNSCGTVALFHLYGNLKNKFELDKDSLLANFFD KVKDMSPEKRGQEFEVNKSIELLHHEFSGKSSGTGDDIDVDTHFIVFLEIDGRLVELDGR KDHPVIHCPTTPASFKYDTGSVIQKKFIEKCEDDNRFSALAVVSSDVV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_117435.fa Sequence name : PVX_117435 Sequence length : 228 VALUES OF COMPUTED PARAMETERS Coef20 : 3.655 CoefTot : -0.264 ChDiff : -13 ZoneTo : 10 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.688 1.265 -0.047 0.555 MesoH : -0.396 0.328 -0.377 0.290 MuHd_075 : 13.313 15.792 3.461 4.083 MuHd_095 : 25.759 16.385 6.647 4.633 MuHd_100 : 19.592 15.341 6.138 3.115 MuHd_105 : 8.560 9.860 4.220 0.750 Hmax_075 : 6.563 9.012 -0.933 3.894 Hmax_095 : 4.725 8.400 -0.296 3.867 Hmax_100 : 7.900 13.000 0.766 4.660 Hmax_105 : 3.033 7.350 -1.105 2.310 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8318 0.1682 DFMC : 0.9084 0.0916
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 228 PVX_117435 MLRNNVWVPIESNPEALYLYSCKLGQTKLAFQDIYGFDAELLDMIPQPVHAIILLYPLKEGMVTPNAATDGSAEQNIDNI 80 WFIKQVVPNSCGTVALFHLYGNLKNKFELDKDSLLANFFDKVKDMSPEKRGQEFEVNKSIELLHHEFSGKSSGTGDDIDV 160 DTHFIVFLEIDGRLVELDGRKDHPVIHCPTTPASFKYDTGSVIQKKFIEKCEDDNRFSALAVVSSDVV 240 ................................................................................ 80 ................................................................................ 160 .................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_117435 3 ----MLR|NN 0.075 . PVX_117435 23 LYLYSCK|LG 0.064 . PVX_117435 28 CKLGQTK|LA 0.070 . PVX_117435 59 ILLYPLK|EG 0.057 . PVX_117435 84 DNIWFIK|QV 0.075 . PVX_117435 104 HLYGNLK|NK 0.060 . PVX_117435 106 YGNLKNK|FE 0.069 . PVX_117435 111 NKFELDK|DS 0.062 . PVX_117435 121 LANFFDK|VK 0.068 . PVX_117435 123 NFFDKVK|DM 0.074 . PVX_117435 129 KDMSPEK|RG 0.058 . PVX_117435 130 DMSPEKR|GQ 0.248 . PVX_117435 138 QEFEVNK|SI 0.087 . PVX_117435 150 HHEFSGK|SS 0.117 . PVX_117435 173 FLEIDGR|LV 0.087 . PVX_117435 180 LVELDGR|KD 0.083 . PVX_117435 181 VELDGRK|DH 0.066 . PVX_117435 196 TTPASFK|YD 0.073 . PVX_117435 205 TGSVIQK|KF 0.070 . PVX_117435 206 GSVIQKK|FI 0.248 . PVX_117435 210 QKKFIEK|CE 0.068 . PVX_117435 216 KCEDDNR|FS 0.081 . ____________________________^_________________

  • Fasta :-

    >PVX_117435 AACAGAAAAAAAAACAACAAATAGGAATACAAAGAAGCTTCAACCGAATTTGTTTAATCC GTGTAGCACATGCGCCAAACCTGTTAATTAAATTTTTTTTTGAAGTACGTTGCTCGTTCG CGACCTTTTCACTCTGCGCATTTGTTTGTACACCCAACTTGGCTATGCGTTCCCGGGGGG TTGACAAATTGAAAAATCGCGGAGAATAAAAAAAAAAAAAATAATAAAATAAAAAAAGTA GTACAAATAAGGGAAATAAAAATAAAACAATACTGCCCTCCCTAAACGCCGCCTTTAAAC ACCCCCTTTAAACGCCGCCTTTTTTCATGTGCACATATTTCACACCTCAATGAAGAGAAA GCAAATTTGTCCCCCATAAAACGGTCCACATATATAAGCCAACACAACGGGGAGGCACTA ACGTGCAGGACAACGCCAGTGCCTTCTCTGCGTAAAAACATCACACGGTGTACCCCGCAC AGTATACGCCGCACGGTATACGCCACACAGCATACGCCGCGCTGTATCCCCCCCCGCTCC GCAAAATGCTACGCAACAACGTTTGGGTTCCCATCGAGTCCAACCCGGAGGCCCTCTACC TGTACTCCTGCAAACTTGGGCAGACAAAGTTGGCGTTTCAGGACATCTACGGGTTTGACG CGGAGCTATTAGATATGATCCCGCAACCTGTGCATGCAATAATACTGTTGTACCCCCTGA AAGAAGGCATGGTCACCCCCAATGCTGCAACCGATGGAAGTGCTGAACAAAACATTGACA ATATTTGGTTCATAAAACAGGTTGTTCCGAATTCTTGCGGAACGGTGGCCCTTTTCCACC TCTACGGAAATTTAAAGAATAAATTCGAGCTGGACAAGGACTCCCTCTTGGCCAATTTTT TCGACAAGGTGAAGGACATGTCGCCCGAGAAACGAGGCCAGGAATTCGAAGTGAACAAGA GCATCGAACTGCTTCATCACGAATTTTCCGGAAAGTCCTCCGGCACGGGGGATGACATAG ACGTTGACACCCACTTCATCGTCTTTCTCGAAATTGACGGGAGGCTCGTCGAGCTGGACG GAAGGAAGGACCATCCCGTTATTCACTGCCCGACAACTCCGGCCAGTTTCAAATACGACA CGGGAAGTGTAATACAAAAAAAGTTCATAGAAAAGTGCGAAGATGACAACAGATTTTCAG CCCTAGCAGTTGTATCAAGTGACGTTGTGTAG
  • Download Fasta

  • Fasta :-

    MLRNNVWVPIESNPEALYLYSCKLGQTKLAFQDIYGFDAELLDMIPQPVHAIILLYPLKE GMVTPNAATDGSAEQNIDNIWFIKQVVPNSCGTVALFHLYGNLKNKFELDKDSLLANFFD KVKDMSPEKRGQEFEVNKSIELLHHEFSGKSSGTGDDIDVDTHFIVFLEIDGRLVELDGR KDHPVIHCPTTPASFKYDTGSVIQKKFIEKCEDDNRFSALAVVSSDVV

    No Results
  • title: catalytic site
  • coordinates: Q85,C91,H163,D178
No Results
No Results
IDSitePeptideScoreMethod
PVX_117435126 SVKDMSPEKR0.996unsp
PVX_117435      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India