PVX_118620 | proteasome subunit alpha type-1, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_118620OTHER0.9999700.0000110.000019
No Results

  • Fasta :-

    >PVX_118620 MYRNLYDTDNITYSPEGRLYQVEYANEAIKQGTCAVAIKSKDFVVVCGLKKRISKLSFHQ EKLFKIDDYIGVTMSGITSDAKVLTKYMRNECLSHKFLFDENMNIEKLVKKVADKYQQNT QRSSRRAFGVGLIIAGYFKEPYIFETKPNGSYFEYIALSFGARSHASKTYLEKNVHLFED SSLEELTIHCLKALRCSLSSENELTIENTSIAIVGKDKPWQEITTVDLVELLIRVNAEQR TENVDADIQNEGIPPNEVDASNPQGDQME
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_118620.fa Sequence name : PVX_118620 Sequence length : 269 VALUES OF COMPUTED PARAMETERS Coef20 : 3.351 CoefTot : -0.191 ChDiff : -6 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.694 1.371 0.042 0.615 MesoH : -0.917 0.074 -0.494 0.163 MuHd_075 : 26.544 14.863 5.324 6.950 MuHd_095 : 24.937 10.526 4.485 5.650 MuHd_100 : 24.641 12.187 4.751 5.367 MuHd_105 : 22.348 13.211 4.954 3.724 Hmax_075 : 4.200 4.433 -1.277 3.197 Hmax_095 : -4.300 -3.600 -3.831 1.190 Hmax_100 : 6.700 3.700 -0.875 2.380 Hmax_105 : -1.500 -2.100 -2.547 1.120 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6809 0.3191 DFMC : 0.7913 0.2087
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 269 PVX_118620 MYRNLYDTDNITYSPEGRLYQVEYANEAIKQGTCAVAIKSKDFVVVCGLKKRISKLSFHQEKLFKIDDYIGVTMSGITSD 80 AKVLTKYMRNECLSHKFLFDENMNIEKLVKKVADKYQQNTQRSSRRAFGVGLIIAGYFKEPYIFETKPNGSYFEYIALSF 160 GARSHASKTYLEKNVHLFEDSSLEELTIHCLKALRCSLSSENELTIENTSIAIVGKDKPWQEITTVDLVELLIRVNAEQR 240 TENVDADIQNEGIPPNEVDASNPQGDQME 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_118620 3 ----MYR|NL 0.090 . PVX_118620 18 TYSPEGR|LY 0.097 . PVX_118620 30 YANEAIK|QG 0.063 . PVX_118620 39 TCAVAIK|SK 0.097 . PVX_118620 41 AVAIKSK|DF 0.071 . PVX_118620 50 VVVCGLK|KR 0.053 . PVX_118620 51 VVCGLKK|RI 0.085 . PVX_118620 52 VCGLKKR|IS 0.192 . PVX_118620 55 LKKRISK|LS 0.164 . PVX_118620 62 LSFHQEK|LF 0.061 . PVX_118620 65 HQEKLFK|ID 0.073 . PVX_118620 82 GITSDAK|VL 0.062 . PVX_118620 86 DAKVLTK|YM 0.063 . PVX_118620 89 VLTKYMR|NE 0.075 . PVX_118620 96 NECLSHK|FL 0.076 . PVX_118620 107 ENMNIEK|LV 0.070 . PVX_118620 110 NIEKLVK|KV 0.073 . PVX_118620 111 IEKLVKK|VA 0.144 . PVX_118620 115 VKKVADK|YQ 0.066 . PVX_118620 122 YQQNTQR|SS 0.149 . PVX_118620 125 NTQRSSR|RA 0.361 . PVX_118620 126 TQRSSRR|AF 0.299 . PVX_118620 139 IIAGYFK|EP 0.060 . PVX_118620 147 PYIFETK|PN 0.064 . PVX_118620 163 ALSFGAR|SH 0.126 . PVX_118620 168 ARSHASK|TY 0.081 . PVX_118620 173 SKTYLEK|NV 0.083 . PVX_118620 192 LTIHCLK|AL 0.067 . PVX_118620 195 HCLKALR|CS 0.073 . PVX_118620 216 SIAIVGK|DK 0.098 . PVX_118620 218 AIVGKDK|PW 0.066 . PVX_118620 234 LVELLIR|VN 0.072 . PVX_118620 240 RVNAEQR|TE 0.072 . ____________________________^_________________

  • Fasta :-

    >PVX_118620 ACGCATATGGTAGAAGAAAAATATGAACCTTCATTTTATATTATTTAAGCCCAAAAGGAT TGCCTTTTAAGGTAGAAAATTTTGTGAAAATAGCGTAAATTTTCAGCACTCAAAAAAAAA AGGAAGCATTTTTGTGCCTTTGTTTTTTTTTTTTTTTCGAATTAGCCATTTCTGCTTAAC TTTGCCGCTTCACCTCGATCTTGTAATTCACATAGTTACATTTTTAAAAACATTTTTCCA TGAGTAAAAAAGGCCTCATATAATTTCGATTTCACGATAAGGAGAAAGCAGAAGCGAGAA AAAGTAGGAAGAACAGAAATAGGAAGAATAACACTAAGCAGGAAAAGAAACACACTCAGA AGGGACGAAGTGGAAGGCGAACTGGAAAGCGAAATTACAAGCGGAGAGAGCGATTGTTCA AAGAAGCAGCAACCATGTATCGAAACCTGTACGACACAGACAATATTACTTACTCTCCGG AAGGAAGGCTGTACCAAGTCGAATACGCGAATGAAGCGATAAAACAGGGGACCTGCGCCG TGGCTATAAAGTCCAAGGATTTTGTGGTCGTTTGCGGACTAAAGAAGCGCATAAGCAAGT TATCGTTCCACCAGGAAAAACTGTTCAAAATCGATGACTACATCGGTGTGACGATGAGTG GCATCACATCCGACGCAAAGGTTTTGACCAAGTACATGCGAAACGAGTGTCTCTCTCATA AGTTCCTTTTTGATGAAAATATGAATATAGAAAAATTAGTGAAAAAGGTGGCAGATAAGT ATCAACAGAATACTCAGAGGAGTAGTAGAAGGGCATTTGGCGTAGGGTTAATAATAGCTG GGTATTTTAAGGAGCCCTACATTTTTGAAACGAAGCCAAATGGTTCATATTTTGAATACA TTGCCTTATCGTTTGGTGCTAGATCTCATGCATCGAAAACGTATCTAGAAAAAAATGTAC ACTTATTTGAAGATTCGTCGTTGGAGGAGCTTACTATTCATTGCTTAAAGGCCTTAAGAT GTTCCCTTTCGAGTGAAAATGAGTTAACTATAGAAAATACATCGATAGCTATTGTTGGTA AGGATAAACCATGGCAAGAAATTACCACCGTAGATTTGGTGGAGCTTCTAATCAGGGTAA ACGCTGAACAGAGAACTGAAAATGTTGACGCAGACATTCAGAATGAGGGAATTCCTCCAA ATGAAGTAGATGCATCAAATCCACAGGGCGATCAAATGGAATGA
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  • Fasta :-

    MYRNLYDTDNITYSPEGRLYQVEYANEAIKQGTCAVAIKSKDFVVVCGLKKRISKLSFHQ EKLFKIDDYIGVTMSGITSDAKVLTKYMRNECLSHKFLFDENMNIEKLVKKVADKYQQNT QRSSRRAFGVGLIIAGYFKEPYIFETKPNGSYFEYIALSFGARSHASKTYLEKNVHLFED SSLEELTIHCLKALRCSLSSENELTIENTSIAIVGKDKPWQEITTVDLVELLIRVNAEQR TENVDADIQNEGIPPNEVDASNPQGDQME

  • title: active site
  • coordinates: T33,L49,K51,K62,A162
No Results
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PVX_118620      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India