PVX_122155 | 26S protease regulatory subunit 10B, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_122155OTHER0.9999770.0000070.000016
No Results

  • Fasta :-

    >PVX_122155 MDNKESIKQYVKKVIEHREIESQVKNLRLDIKEQNKIYEKTEDNLKALQSVGQIIGQVLK QLEDEKFIVKASSGPRYVVGCKSKINKGKLAIGTRVSLDMTTLTVMKRLPCEVDPLVFNM ISDIDKSENSKNKVNYNQIGGLSEQIRQMREVVELPILNPLLFKRVGIKTPKGVLLYGPP GTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFTYAKEHQPCIIFMDEID AIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKIIMATNRPDVLDPALIRPGRLD RKIEIPLPNETARIEILKIHANKMTKLGEIDYESVCRLCDGFNGADLRNVCTEAGMFAIR SMRDYVIEEDFYKAARKINEAKKLEGKIEYEKI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_122155.fa Sequence name : PVX_122155 Sequence length : 393 VALUES OF COMPUTED PARAMETERS Coef20 : 3.269 CoefTot : 0.000 ChDiff : 8 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.588 1.212 -0.031 0.406 MesoH : -0.647 0.457 -0.352 0.202 MuHd_075 : 41.927 24.050 13.149 9.562 MuHd_095 : 25.793 22.732 10.333 5.322 MuHd_100 : 25.266 21.887 8.686 4.697 MuHd_105 : 26.429 20.104 7.060 4.801 Hmax_075 : 0.933 5.833 -1.305 2.893 Hmax_095 : -5.075 8.100 -1.626 1.980 Hmax_100 : -11.000 5.500 -4.349 0.220 Hmax_105 : -9.000 6.125 -4.568 1.180 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8637 0.1363 DFMC : 0.8940 0.1060
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 393 PVX_122155 MDNKESIKQYVKKVIEHREIESQVKNLRLDIKEQNKIYEKTEDNLKALQSVGQIIGQVLKQLEDEKFIVKASSGPRYVVG 80 CKSKINKGKLAIGTRVSLDMTTLTVMKRLPCEVDPLVFNMISDIDKSENSKNKVNYNQIGGLSEQIRQMREVVELPILNP 160 LLFKRVGIKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFTYAKEHQPCIIFMDEID 240 AIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKIIMATNRPDVLDPALIRPGRLDRKIEIPLPNETARIEILKIH 320 ANKMTKLGEIDYESVCRLCDGFNGADLRNVCTEAGMFAIRSMRDYVIEEDFYKAARKINEAKKLEGKIEYEKI 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ......................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_122155 4 ---MDNK|ES 0.061 . PVX_122155 8 DNKESIK|QY 0.064 . PVX_122155 12 SIKQYVK|KV 0.069 . PVX_122155 13 IKQYVKK|VI 0.168 . PVX_122155 18 KKVIEHR|EI 0.117 . PVX_122155 25 EIESQVK|NL 0.058 . PVX_122155 28 SQVKNLR|LD 0.083 . PVX_122155 32 NLRLDIK|EQ 0.066 . PVX_122155 36 DIKEQNK|IY 0.070 . PVX_122155 40 QNKIYEK|TE 0.054 . PVX_122155 46 KTEDNLK|AL 0.060 . PVX_122155 60 IIGQVLK|QL 0.073 . PVX_122155 66 KQLEDEK|FI 0.062 . PVX_122155 70 DEKFIVK|AS 0.059 . PVX_122155 76 KASSGPR|YV 0.132 . PVX_122155 82 RYVVGCK|SK 0.073 . PVX_122155 84 VVGCKSK|IN 0.068 . PVX_122155 87 CKSKINK|GK 0.084 . PVX_122155 89 SKINKGK|LA 0.094 . PVX_122155 95 KLAIGTR|VS 0.076 . PVX_122155 107 TTLTVMK|RL 0.057 . PVX_122155 108 TLTVMKR|LP 0.146 . PVX_122155 126 MISDIDK|SE 0.081 . PVX_122155 131 DKSENSK|NK 0.059 . PVX_122155 133 SENSKNK|VN 0.078 . PVX_122155 147 GLSEQIR|QM 0.125 . PVX_122155 150 EQIRQMR|EV 0.279 . PVX_122155 164 LNPLLFK|RV 0.077 . PVX_122155 165 NPLLFKR|VG 0.142 . PVX_122155 169 FKRVGIK|TP 0.062 . PVX_122155 172 VGIKTPK|GV 0.074 . PVX_122155 184 GPPGTGK|TL 0.060 . PVX_122155 189 GKTLLAR|AM 0.083 . PVX_122155 201 INCNFMR|IV 0.138 . PVX_122155 210 VSAIVDK|YI 0.092 . PVX_122155 217 YIGESAR|II 0.113 . PVX_122155 220 ESARIIR|EM 0.257 . PVX_122155 227 EMFTYAK|EH 0.060 . PVX_122155 245 IDAIGGR|RF 0.101 . PVX_122155 246 DAIGGRR|FS 0.106 . PVX_122155 255 QGTSADR|EI 0.077 . PVX_122155 259 ADREIQR|TL 0.105 . PVX_122155 278 EELGNVK|II 0.056 . PVX_122155 285 IIMATNR|PD 0.073 . PVX_122155 295 LDPALIR|PG 0.069 . PVX_122155 298 ALIRPGR|LD 0.244 . PVX_122155 301 RPGRLDR|KI 0.344 . PVX_122155 302 PGRLDRK|IE 0.071 . PVX_122155 313 LPNETAR|IE 0.114 . PVX_122155 318 ARIEILK|IH 0.062 . PVX_122155 323 LKIHANK|MT 0.075 . PVX_122155 326 HANKMTK|LG 0.066 . PVX_122155 337 DYESVCR|LC 0.076 . PVX_122155 348 FNGADLR|NV 0.133 . PVX_122155 360 AGMFAIR|SM 0.126 . PVX_122155 363 FAIRSMR|DY 0.380 . PVX_122155 373 IEEDFYK|AA 0.076 . PVX_122155 376 DFYKAAR|KI 0.093 . PVX_122155 377 FYKAARK|IN 0.084 . PVX_122155 382 RKINEAK|KL 0.086 . PVX_122155 383 KINEAKK|LE 0.136 . PVX_122155 387 AKKLEGK|IE 0.061 . PVX_122155 392 GKIEYEK|I- 0.061 . ____________________________^_________________

  • Fasta :-

    >PVX_122155 TAGCATAAAAAAAAAAAAAAAAGTGGAAAAAAAAGAGAACCAAAAATAAGCAGTAAGGAT TAGCAAGGGATAAAGGGGAAGGAGGAAAAGAGGCAAGAAGGAACAGAAGCAAGAAGGAAC AGAAGCAAGAAGGAACAGAAGCAAGGAAGCACAGAGGAAAAGAGGAAAAGAAGCCATAGG GAGAAACGAACGAGGGGTCCACAGCGGAAGCACCTTTGCAATAGCATAAACGTTACCGCC ACACAGCAAAAGAACCCCCCTGCGCAGGAGTTCCCCCCGCACCCACACACCACCTTTTCG CCTTTATACAATAAGGAGGCACACAAGCGTGAAAGAGCAGAAACAATCGATGAAGTTATG AGTCAGAATGGATAACAAAGAAAGCATCAAACAGTACGTGAAGAAAGTGATAGAGCACAG GGAAATCGAGAGCCAAGTGAAGAATCTCAGATTAGATATAAAAGAGCAAAATAAGATATA CGAAAAGACCGAAGATAACTTGAAGGCACTGCAAAGTGTTGGGCAAATAATAGGGCAAGT GCTAAAGCAGTTAGAAGATGAGAAATTTATCGTGAAGGCATCAAGTGGGCCTAGATATGT GGTAGGATGCAAGTCCAAAATAAATAAAGGGAAATTAGCCATAGGCACGAGGGTGTCATT AGACATGACCACTCTGACGGTTATGAAAAGATTGCCATGTGAAGTAGACCCATTAGTATT CAACATGATTAGTGACATAGACAAAAGTGAAAATAGCAAAAATAAAGTGAACTACAATCA GATAGGAGGATTAAGTGAGCAGATAAGACAAATGAGGGAAGTGGTGGAGTTGCCAATACT TAACCCGCTTTTATTTAAGAGGGTAGGAATTAAAACACCCAAAGGGGTGCTACTGTACGG TCCACCAGGTACAGGGAAAACACTACTAGCCAGGGCAATGGCATCAAACATTAATTGTAA TTTTATGAGAATAGTAGTTTCAGCCATTGTAGATAAGTACATCGGTGAAAGTGCAAGAAT TATTAGGGAAATGTTCACCTATGCTAAGGAACACCAACCGTGTATCATTTTTATGGACGA AATTGATGCCATAGGAGGAAGGAGATTTTCTCAGGGTACTTCTGCAGATAGAGAAATTCA AAGAACGCTCATGGAGTTGCTAAACCATTTAGACGGTTTTGAAGAATTAGGAAATGTCAA AATTATTATGGCTACCAACAGACCAGATGTCCTAGACCCAGCGTTAATAAGACCTGGTAG ATTAGATAGAAAAATTGAAATTCCTCTACCGAATGAGACTGCCAGAATTGAAATTTTAAA AATTCACGCCAATAAAATGACCAAACTGGGGGAAATAGACTACGAGTCGGTTTGCAGATT GTGTGACGGTTTCAACGGAGCTGATCTCAGAAATGTCTGTACAGAGGCAGGCATGTTTGC CATTCGGTCTATGCGCGATTACGTCATTGAGGAGGACTTTTACAAGGCCGCTCGAAAGAT TAATGAGGCTAAGAAGTTGGAGGGTAAAATCGAGTACGAAAAAATTTAG
  • Download Fasta

  • Fasta :-

    MDNKESIKQYVKKVIEHREIESQVKNLRLDIKEQNKIYEKTEDNLKALQSVGQIIGQVLK QLEDEKFIVKASSGPRYVVGCKSKINKGKLAIGTRVSLDMTTLTVMKRLPCEVDPLVFNM ISDIDKSENSKNKVNYNQIGGLSEQIRQMREVVELPILNPLLFKRVGIKTPKGVLLYGPP GTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFTYAKEHQPCIIFMDEID AIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKIIMATNRPDVLDPALIRPGRLD RKIEIPLPNETARIEILKIHANKMTKLGEIDYESVCRLCDGFNGADLRNVCTEAGMFAIR SMRDYVIEEDFYKAARKINEAKKLEGKIEYEKI

  • title: ATP binding site
  • coordinates: P179,P180,G181,T182,G183,K184,T185,L186,D237,N284
No Results
No Results
IDSitePeptideScoreMethod
PVX_122155248 SGRRFSQGTS0.994unsp
PVX_122155      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India