PVX_122830 | big signal peptidase, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_122830OTHER0.9329990.0003000.066701
No Results

  • Fasta :-

    >PVX_122830 MNRSSHYVKRSYALNFLRKNILHTNRVNHSSFSYHGSGKGEDILHKCYANFLEERKRLQN VLCRSTNICKFVLPPRSRTPPLRYYAEKKKRGNNKYKAKKRKKYFFNFAKINNPLNFIKK IILSFLLIFGINNYIIDMTLTSGSSMCPLINKNGVILFYVCDDTVRFIHQARTILLYSCI NLLLRCYAVIGSNFEQAYMVLLNNKIFSLVEKLKKRITENKHVYRRGDVVLLTSPVNDKK RVCKRIIAIGNDKLFVDNINAFVHVPKDNVWIEGDNKMDSFDSRNYGFVHMDLIIGRVIF LLDPFIDFRFISNKTS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_122830.fa Sequence name : PVX_122830 Sequence length : 316 VALUES OF COMPUTED PARAMETERS Coef20 : 4.394 CoefTot : -1.355 ChDiff : 31 ZoneTo : 40 KR : 7 DE : 0 CleavSite : 13 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.106 1.976 0.294 0.718 MesoH : 0.159 0.979 -0.082 0.363 MuHd_075 : 40.105 26.881 12.487 9.634 MuHd_095 : 39.819 17.003 8.843 8.166 MuHd_100 : 32.715 18.482 8.993 7.118 MuHd_105 : 32.221 21.786 10.125 6.823 Hmax_075 : 16.683 20.767 3.476 4.713 Hmax_095 : 5.400 7.437 -1.161 2.835 Hmax_100 : 4.100 6.600 -1.477 2.790 Hmax_105 : 9.300 14.117 1.134 4.515 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0388 0.9612 DFMC : 0.1070 0.8930 This protein is probably imported in mitochondria. f(Ser) = 0.1750 f(Arg) = 0.1000 CMi = 0.83333 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 316 PVX_122830 MNRSSHYVKRSYALNFLRKNILHTNRVNHSSFSYHGSGKGEDILHKCYANFLEERKRLQNVLCRSTNICKFVLPPRSRTP 80 PLRYYAEKKKRGNNKYKAKKRKKYFFNFAKINNPLNFIKKIILSFLLIFGINNYIIDMTLTSGSSMCPLINKNGVILFYV 160 CDDTVRFIHQARTILLYSCINLLLRCYAVIGSNFEQAYMVLLNNKIFSLVEKLKKRITENKHVYRRGDVVLLTSPVNDKK 240 RVCKRIIAIGNDKLFVDNINAFVHVPKDNVWIEGDNKMDSFDSRNYGFVHMDLIIGRVIFLLDPFIDFRFISNKTS 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................................................................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_122830 3 ----MNR|SS 0.154 . PVX_122830 9 RSSHYVK|RS 0.075 . PVX_122830 10 SSHYVKR|SY 0.396 . PVX_122830 18 YALNFLR|KN 0.072 . PVX_122830 19 ALNFLRK|NI 0.083 . PVX_122830 26 NILHTNR|VN 0.082 . PVX_122830 39 SYHGSGK|GE 0.072 . PVX_122830 46 GEDILHK|CY 0.060 . PVX_122830 55 ANFLEER|KR 0.069 . PVX_122830 56 NFLEERK|RL 0.069 . PVX_122830 57 FLEERKR|LQ 0.119 . PVX_122830 64 LQNVLCR|ST 0.139 . PVX_122830 70 RSTNICK|FV 0.070 . PVX_122830 76 KFVLPPR|SR 0.104 . PVX_122830 78 VLPPRSR|TP 0.061 . PVX_122830 83 SRTPPLR|YY 0.114 . PVX_122830 88 LRYYAEK|KK 0.070 . PVX_122830 89 RYYAEKK|KR 0.090 . PVX_122830 90 YYAEKKK|RG 0.083 . PVX_122830 91 YAEKKKR|GN 0.224 . PVX_122830 95 KKRGNNK|YK 0.084 . PVX_122830 97 RGNNKYK|AK 0.081 . PVX_122830 99 NNKYKAK|KR 0.077 . PVX_122830 100 NKYKAKK|RK 0.085 . PVX_122830 101 KYKAKKR|KK 0.157 . PVX_122830 102 YKAKKRK|KY 0.115 . PVX_122830 103 KAKKRKK|YF 0.111 . PVX_122830 110 YFFNFAK|IN 0.065 . PVX_122830 119 NPLNFIK|KI 0.066 . PVX_122830 120 PLNFIKK|II 0.103 . PVX_122830 152 MCPLINK|NG 0.052 . PVX_122830 166 VCDDTVR|FI 0.111 . PVX_122830 172 RFIHQAR|TI 0.080 . PVX_122830 185 CINLLLR|CY 0.084 . PVX_122830 205 MVLLNNK|IF 0.063 . PVX_122830 212 IFSLVEK|LK 0.066 . PVX_122830 214 SLVEKLK|KR 0.069 . PVX_122830 215 LVEKLKK|RI 0.090 . PVX_122830 216 VEKLKKR|IT 0.189 . PVX_122830 221 KRITENK|HV 0.098 . PVX_122830 225 ENKHVYR|RG 0.109 . PVX_122830 226 NKHVYRR|GD 0.172 . PVX_122830 239 TSPVNDK|KR 0.055 . PVX_122830 240 SPVNDKK|RV 0.141 . PVX_122830 241 PVNDKKR|VC 0.207 . PVX_122830 244 DKKRVCK|RI 0.207 . PVX_122830 245 KKRVCKR|II 0.282 . PVX_122830 253 IAIGNDK|LF 0.059 . PVX_122830 267 AFVHVPK|DN 0.087 . PVX_122830 277 WIEGDNK|MD 0.056 . PVX_122830 284 MDSFDSR|NY 0.145 . PVX_122830 297 MDLIIGR|VI 0.076 . PVX_122830 309 DPFIDFR|FI 0.110 . PVX_122830 314 FRFISNK|TS 0.070 . ____________________________^_________________

  • Fasta :-

    >PVX_122830 ATGAACAGAAGTAGCCATTACGTCAAAAGATCATATGCACTAAATTTTTTACGGAAAAAT ATTTTACACACAAATAGGGTTAATCATAGCTCGTTTAGCTACCATGGGAGCGGTAAGGGA GAGGATATACTCCATAAATGCTATGCCAATTTTTTGGAGGAAAGAAAAAGGCTGCAAAAT GTACTGTGTAGAAGCACGAACATTTGCAAGTTTGTATTACCCCCAAGGAGTAGGACTCCT CCGTTGAGGTACTACGCTGAGAAGAAGAAAAGAGGTAACAATAAATACAAAGCGAAAAAA AGGAAAAAATATTTTTTCAATTTTGCAAAAATTAATAACCCCTTGAATTTTATAAAAAAG ATTATATTATCCTTTTTACTTATTTTTGGAATAAATAATTATATTATCGACATGACGCTG ACGAGCGGATCGAGCATGTGTCCATTAATAAATAAAAACGGAGTCATCTTATTCTATGTG TGTGATGATACCGTAAGATTTATTCACCAAGCGCGCACCATCCTTCTGTACAGCTGTATA AATCTGCTGCTTCGTTGTTACGCCGTAATTGGGTCCAACTTTGAGCAAGCCTATATGGTC CTTTTAAATAATAAAATTTTCAGCTTGGTAGAAAAGTTAAAAAAAAGAATTACAGAAAAT AAACATGTTTACAGAAGAGGCGATGTCGTGTTGTTAACTTCTCCTGTGAATGACAAAAAA AGAGTGTGTAAAAGGATTATTGCCATAGGGAATGATAAATTATTCGTTGATAATATAAAC GCCTTTGTTCACGTCCCTAAGGATAACGTATGGATAGAAGGGGACAACAAAATGGATTCT TTTGACAGTCGAAATTACGGATTTGTTCATATGGATTTAATAATTGGCAGAGTCATTTTC TTGCTCGACCCGTTTATCGACTTCCGCTTTATTAGTAACAAAACGAGTTGA
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  • Fasta :-

    MNRSSHYVKRSYALNFLRKNILHTNRVNHSSFSYHGSGKGEDILHKCYANFLEERKRLQN VLCRSTNICKFVLPPRSRTPPLRYYAEKKKRGNNKYKAKKRKKYFFNFAKINNPLNFIKK IILSFLLIFGINNYIIDMTLTSGSSMCPLINKNGVILFYVCDDTVRFIHQARTILLYSCI NLLLRCYAVIGSNFEQAYMVLLNNKIFSLVEKLKKRITENKHVYRRGDVVLLTSPVNDKK RVCKRIIAIGNDKLFVDNINAFVHVPKDNVWIEGDNKMDSFDSRNYGFVHMDLIIGRVIF LLDPFIDFRFISNKTS

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PVX_122830      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India