PVX_123162 | GTPase, putative

  • Computed_GO_Component_IDs:  GO:0005622      

  • Computed_GO_Components:  intracellular      

  • Computed_GO_Function_IDs:  GO:0005525      

  • Computed_GO_Functions:  GTP binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PVX_123162SP0.0802260.9113330.008442CS pos: 25-26. LCC-FV. Pr: 0.5375
No Results

  • Fasta :-

    >PVX_123162 MRSVVKSPLSLFLWLFFVNVTRLCCFVPKRDTAKLVTSSNFRLFEDIKKKEDLEYKPFKN ISFNKLKTNLKNFLVINKKFNISDVKQVSFLGKFHNYEKIENYGVNEICILGRSNVGKST FLRNFIKYLINVNEHATVKVSKNSGCTRSINLYAFENGKKKKLFILTDMPGFGYAAGIGK KKMEFLMKNLEDYIFLRNQICLFFVLIDMSVDIQKVDVSIVDAIRKTNVPFRVICTKSDK FSASAEERLQAIKNFYQLEKIPIHISKFSTHNYINIFKEIQHHCNLDTP
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_123162.fa Sequence name : PVX_123162 Sequence length : 289 VALUES OF COMPUTED PARAMETERS Coef20 : 4.843 CoefTot : 0.744 ChDiff : 21 ZoneTo : 44 KR : 7 DE : 1 CleavSite : 32 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.400 2.024 0.252 0.629 MesoH : -0.916 0.503 -0.438 0.218 MuHd_075 : 28.142 15.022 5.834 6.696 MuHd_095 : 36.059 18.033 10.973 7.425 MuHd_100 : 32.538 18.816 9.217 6.731 MuHd_105 : 27.767 16.700 7.787 6.222 Hmax_075 : 12.950 10.800 1.689 4.020 Hmax_095 : 12.425 20.738 4.428 3.413 Hmax_100 : 20.200 24.100 5.348 7.090 Hmax_105 : 21.233 25.200 5.741 7.933 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3606 0.6394 DFMC : 0.3891 0.6109 This protein is probably imported in mitochondria. f(Ser) = 0.1136 f(Arg) = 0.0909 CMi = 0.57604 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 289 PVX_123162 MRSVVKSPLSLFLWLFFVNVTRLCCFVPKRDTAKLVTSSNFRLFEDIKKKEDLEYKPFKNISFNKLKTNLKNFLVINKKF 80 NISDVKQVSFLGKFHNYEKIENYGVNEICILGRSNVGKSTFLRNFIKYLINVNEHATVKVSKNSGCTRSINLYAFENGKK 160 KKLFILTDMPGFGYAAGIGKKKMEFLMKNLEDYIFLRNQICLFFVLIDMSVDIQKVDVSIVDAIRKTNVPFRVICTKSDK 240 FSASAEERLQAIKNFYQLEKIPIHISKFSTHNYINIFKEIQHHCNLDTP 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_123162 2 -----MR|SV 0.264 . PVX_123162 6 -MRSVVK|SP 0.068 . PVX_123162 22 FFVNVTR|LC 0.074 . PVX_123162 29 LCCFVPK|RD 0.074 . PVX_123162 30 CCFVPKR|DT 0.245 . PVX_123162 34 PKRDTAK|LV 0.086 . PVX_123162 42 VTSSNFR|LF 0.097 . PVX_123162 48 RLFEDIK|KK 0.064 . PVX_123162 49 LFEDIKK|KE 0.074 . PVX_123162 50 FEDIKKK|ED 0.082 . PVX_123162 56 KEDLEYK|PF 0.058 . PVX_123162 59 LEYKPFK|NI 0.069 . PVX_123162 65 KNISFNK|LK 0.061 . PVX_123162 67 ISFNKLK|TN 0.064 . PVX_123162 71 KLKTNLK|NF 0.057 . PVX_123162 78 NFLVINK|KF 0.056 . PVX_123162 79 FLVINKK|FN 0.093 . PVX_123162 86 FNISDVK|QV 0.076 . PVX_123162 93 QVSFLGK|FH 0.071 . PVX_123162 99 KFHNYEK|IE 0.061 . PVX_123162 113 EICILGR|SN 0.104 . PVX_123162 118 GRSNVGK|ST 0.132 . PVX_123162 123 GKSTFLR|NF 0.128 . PVX_123162 127 FLRNFIK|YL 0.079 . PVX_123162 139 NEHATVK|VS 0.062 . PVX_123162 142 ATVKVSK|NS 0.070 . PVX_123162 148 KNSGCTR|SI 0.158 . PVX_123162 159 YAFENGK|KK 0.054 . PVX_123162 160 AFENGKK|KK 0.083 . PVX_123162 161 FENGKKK|KL 0.122 . PVX_123162 162 ENGKKKK|LF 0.098 . PVX_123162 180 YAAGIGK|KK 0.061 . PVX_123162 181 AAGIGKK|KM 0.084 . PVX_123162 182 AGIGKKK|ME 0.089 . PVX_123162 188 KMEFLMK|NL 0.080 . PVX_123162 197 EDYIFLR|NQ 0.079 . PVX_123162 215 MSVDIQK|VD 0.060 . PVX_123162 225 SIVDAIR|KT 0.076 . PVX_123162 226 IVDAIRK|TN 0.067 . PVX_123162 232 KTNVPFR|VI 0.124 . PVX_123162 237 FRVICTK|SD 0.077 . PVX_123162 240 ICTKSDK|FS 0.068 . PVX_123162 248 SASAEER|LQ 0.091 . PVX_123162 253 ERLQAIK|NF 0.064 . PVX_123162 260 NFYQLEK|IP 0.060 . PVX_123162 267 IPIHISK|FS 0.078 . PVX_123162 278 NYINIFK|EI 0.060 . ____________________________^_________________

  • Fasta :-

    >PVX_123162 ATGCGAAGCGTAGTTAAATCGCCCCTCTCCCTTTTTCTTTGGTTGTTCTTCGTTAATGTG ACTCGTCTGTGTTGTTTCGTTCCCAAAAGGGATACCGCCAAACTTGTGACATCTTCAAAT TTCCGCCTCTTTGAAGACATTAAAAAGAAGGAAGACCTCGAATATAAGCCGTTCAAAAAT ATCAGCTTTAACAAGCTTAAGACCAATTTGAAAAACTTCCTTGTAATCAACAAAAAGTTT AACATTTCGGATGTCAAGCAGGTTTCCTTTTTAGGAAAATTTCACAATTACGAGAAAATT GAAAATTACGGCGTAAACGAAATATGCATACTGGGCAGGAGCAACGTAGGGAAATCAACC TTCCTGAGGAACTTCATAAAATATCTTATCAACGTGAATGAGCATGCAACTGTGAAGGTT TCGAAGAACAGCGGGTGTACTAGGTCTATCAATTTATATGCTTTTGAAAATGGAAAGAAA AAGAAGCTGTTCATTTTGACGGACATGCCTGGCTTTGGCTATGCTGCAGGAATAGGCAAA AAGAAAATGGAGTTTTTGATGAAGAACCTGGAGGACTACATATTCCTGCGAAATCAAATA TGCCTCTTTTTTGTTCTTATCGACATGAGCGTGGACATACAGAAGGTTGACGTGTCCATA GTGGACGCCATAAGAAAAACGAACGTACCCTTCAGAGTCATCTGCACAAAGAGCGACAAG TTCAGCGCGAGTGCTGAGGAACGCCTCCAAGCAATCAAAAATTTTTATCAGCTCGAAAAA ATCCCCATACACATTTCGAAATTTTCGACGCACAATTACATAAACATTTTCAAAGAAATT CAGCACCACTGCAATTTGGACACCCCGTGA
  • Download Fasta

  • Fasta :-

    MRSVVKSPLSLFLWLFFVNVTRLCCFVPKRDTAKLVTSSNFRLFEDIKKKEDLEYKPFKN ISFNKLKTNLKNFLVINKKFNISDVKQVSFLGKFHNYEKIENYGVNEICILGRSNVGKST FLRNFIKYLINVNEHATVKVSKNSGCTRSINLYAFENGKKKKLFILTDMPGFGYAAGIGK KKMEFLMKNLEDYIFLRNQICLFFVLIDMSVDIQKVDVSIVDAIRKTNVPFRVICTKSDK FSASAEERLQAIKNFYQLEKIPIHISKFSTHNYINIFKEIQHHCNLDTP

  • title: GTP/Mg2+ binding site
  • coordinates: S114,N115,V116,G117,K118,S119,T120,G171,T236,K237,D239,S269,T270,H271
No Results
No Results
IDSitePeptideScoreMethod
PVX_123162244 SKFSASAEER0.992unsp
PVX_123162      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India