PVX_123570 | hypothetical protein, conserved

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_IDPredictionOTHERSPmTPCS_Position
PVX_123570OTHER0.9887060.0078890.003405
No Results

  • Fasta :-

    >PVX_123570 MSSFNVKLKIYDLSRGMVKLWSPFLIGKQLNGMWHTAVSVYDMEYFYGGGIMCLPPNQFE TYYDLQPVNVVDMGITELEQSHFHEYLNGIQPDFTVDKYNLVNWNCNNFTNEVCNFLVGK NIPQYILDLPKEVMSTTQGRLILDMMQSYQTNIAPGFETSLPVLNNESNDSSRCTNSKAG CSKEAEVKELPKVPSVSLDNFFNENKIENLLDEYIKNEKYDVCEKKTFLSFLKNLLDNVS TNPDALKNRYVHVKKFPNFQSTPGNSEYNKILSSLNFFQGYIENDEINNLQKFTIFVDSK YNKMHAFTEHLDLFLNKNVFLKNPDKTIFKMETLKFKDMCEYAAYLDKKKNNSNDVLIFI SEAFLNNNFDVTNEENDLNHFNKVKAGICGDPQVERDFLSSTLDLLEGRINELDSSGEKC PC
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_123570.fa Sequence name : PVX_123570 Sequence length : 422 VALUES OF COMPUTED PARAMETERS Coef20 : 4.225 CoefTot : -1.223 ChDiff : -15 ZoneTo : 41 KR : 5 DE : 1 CleavSite : 17 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.453 0.953 -0.000 0.463 MesoH : -0.416 0.097 -0.418 0.253 MuHd_075 : 29.380 14.227 8.215 6.283 MuHd_095 : 38.100 23.386 8.331 7.751 MuHd_100 : 40.371 21.955 9.049 8.254 MuHd_105 : 43.007 21.417 9.982 8.577 Hmax_075 : 17.500 17.033 2.907 6.988 Hmax_095 : 20.500 19.700 2.528 7.350 Hmax_100 : 18.300 15.500 1.884 6.070 Hmax_105 : 19.133 18.667 3.105 6.487 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1879 0.8121 DFMC : 0.4247 0.5753 This protein is probably imported in chloroplast. f(Ser) = 0.1220 f(Arg) = 0.0244 CMi = 1.17096 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 422 PVX_123570 MSSFNVKLKIYDLSRGMVKLWSPFLIGKQLNGMWHTAVSVYDMEYFYGGGIMCLPPNQFETYYDLQPVNVVDMGITELEQ 80 SHFHEYLNGIQPDFTVDKYNLVNWNCNNFTNEVCNFLVGKNIPQYILDLPKEVMSTTQGRLILDMMQSYQTNIAPGFETS 160 LPVLNNESNDSSRCTNSKAGCSKEAEVKELPKVPSVSLDNFFNENKIENLLDEYIKNEKYDVCEKKTFLSFLKNLLDNVS 240 TNPDALKNRYVHVKKFPNFQSTPGNSEYNKILSSLNFFQGYIENDEINNLQKFTIFVDSKYNKMHAFTEHLDLFLNKNVF 320 LKNPDKTIFKMETLKFKDMCEYAAYLDKKKNNSNDVLIFISEAFLNNNFDVTNEENDLNHFNKVKAGICGDPQVERDFLS 400 STLDLLEGRINELDSSGEKCPC 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ...................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_123570 7 MSSFNVK|LK 0.066 . PVX_123570 9 SFNVKLK|IY 0.084 . PVX_123570 15 KIYDLSR|GM 0.074 . PVX_123570 19 LSRGMVK|LW 0.073 . PVX_123570 28 SPFLIGK|QL 0.072 . PVX_123570 98 PDFTVDK|YN 0.062 . PVX_123570 120 CNFLVGK|NI 0.071 . PVX_123570 131 YILDLPK|EV 0.065 . PVX_123570 140 MSTTQGR|LI 0.108 . PVX_123570 173 ESNDSSR|CT 0.109 . PVX_123570 178 SRCTNSK|AG 0.075 . PVX_123570 183 SKAGCSK|EA 0.087 . PVX_123570 188 SKEAEVK|EL 0.066 . PVX_123570 192 EVKELPK|VP 0.065 . PVX_123570 206 NFFNENK|IE 0.053 . PVX_123570 216 LLDEYIK|NE 0.054 . PVX_123570 219 EYIKNEK|YD 0.057 . PVX_123570 225 KYDVCEK|KT 0.055 . PVX_123570 226 YDVCEKK|TF 0.096 . PVX_123570 233 TFLSFLK|NL 0.062 . PVX_123570 247 TNPDALK|NR 0.060 . PVX_123570 249 PDALKNR|YV 0.171 . PVX_123570 254 NRYVHVK|KF 0.077 . PVX_123570 255 RYVHVKK|FP 0.095 . PVX_123570 270 GNSEYNK|IL 0.076 . PVX_123570 292 EINNLQK|FT 0.070 . PVX_123570 300 TIFVDSK|YN 0.068 . PVX_123570 303 VDSKYNK|MH 0.068 . PVX_123570 317 LDLFLNK|NV 0.075 . PVX_123570 322 NKNVFLK|NP 0.070 . PVX_123570 326 FLKNPDK|TI 0.071 . PVX_123570 330 PDKTIFK|ME 0.059 . PVX_123570 335 FKMETLK|FK 0.071 . PVX_123570 337 METLKFK|DM 0.071 . PVX_123570 348 YAAYLDK|KK 0.061 . PVX_123570 349 AAYLDKK|KN 0.087 . PVX_123570 350 AYLDKKK|NN 0.086 . PVX_123570 383 DLNHFNK|VK 0.072 . PVX_123570 385 NHFNKVK|AG 0.072 . PVX_123570 396 GDPQVER|DF 0.092 . PVX_123570 409 LDLLEGR|IN 0.071 . PVX_123570 419 LDSSGEK|CP 0.060 . ____________________________^_________________

  • Fasta :-

    >PVX_123570 ATGTCGTCCTTCAATGTCAAGCTGAAGATATACGATTTGTCCAGGGGAATGGTAAAGTTG TGGTCCCCCTTTTTGATTGGAAAACAATTAAATGGCATGTGGCACACGGCCGTCTCGGTC TATGACATGGAGTACTTCTACGGTGGAGGAATCATGTGCCTGCCTCCAAACCAATTCGAG ACGTACTACGACCTCCAGCCAGTGAACGTCGTCGATATGGGAATAACCGAACTGGAACAG TCGCACTTTCACGAATACCTAAACGGCATTCAGCCAGATTTCACAGTAGACAAATACAAT TTAGTCAACTGGAATTGCAACAATTTTACAAACGAAGTGTGCAATTTCTTGGTGGGGAAG AATATTCCTCAATACATTTTGGATCTCCCGAAGGAAGTCATGTCGACGACTCAAGGGAGA TTAATTTTAGACATGATGCAGTCGTACCAAACGAACATCGCTCCTGGGTTTGAAACGAGC TTACCTGTATTAAACAATGAAAGTAATGACAGCAGTAGATGCACAAATAGCAAAGCGGGA TGCAGCAAGGAAGCGGAGGTTAAGGAGCTCCCGAAAGTTCCAAGTGTTTCATTAGATAAT TTTTTTAACGAAAATAAAATCGAAAATTTATTAGACGAATATATAAAGAATGAAAAATAT GATGTGTGTGAAAAAAAAACTTTTTTAAGTTTTTTGAAAAACCTTCTAGATAACGTAAGC ACAAATCCAGATGCTTTAAAAAACCGTTATGTGCATGTTAAAAAGTTCCCTAATTTTCAG AGCACGCCTGGAAATAGTGAATATAATAAAATTTTATCGTCCTTGAATTTTTTCCAAGGA TATATAGAAAATGATGAAATAAATAATTTGCAAAAGTTTACCATTTTTGTGGATTCCAAG TATAATAAAATGCACGCTTTTACAGAACATTTGGATTTATTTTTAAACAAAAATGTTTTT TTAAAAAATCCAGATAAAACCATTTTCAAAATGGAAACTTTGAAATTCAAGGACATGTGT GAATATGCTGCTTATCTCGATAAAAAGAAAAACAACTCGAACGATGTGCTTATTTTTATA TCTGAAGCTTTTTTAAACAATAATTTTGATGTCACCAATGAGGAAAATGACCTTAACCAT TTCAACAAGGTGAAGGCTGGGATATGTGGTGACCCGCAGGTGGAAAGGGACTTCTTGTCC AGCACGTTGGACCTTCTGGAAGGACGCATAAATGAGTTGGACTCATCCGGTGAAAAGTGC CCATGTTGA
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  • Fasta :-

    MSSFNVKLKIYDLSRGMVKLWSPFLIGKQLNGMWHTAVSVYDMEYFYGGGIMCLPPNQFE TYYDLQPVNVVDMGITELEQSHFHEYLNGIQPDFTVDKYNLVNWNCNNFTNEVCNFLVGK NIPQYILDLPKEVMSTTQGRLILDMMQSYQTNIAPGFETSLPVLNNESNDSSRCTNSKAG CSKEAEVKELPKVPSVSLDNFFNENKIENLLDEYIKNEKYDVCEKKTFLSFLKNLLDNVS TNPDALKNRYVHVKKFPNFQSTPGNSEYNKILSSLNFFQGYIENDEINNLQKFTIFVDSK YNKMHAFTEHLDLFLNKNVFLKNPDKTIFKMETLKFKDMCEYAAYLDKKKNNSNDVLIFI SEAFLNNNFDVTNEENDLNHFNKVKAGICGDPQVERDFLSSTLDLLEGRINELDSSGEKC PC

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IDSitePeptideScoreMethod
PVX_123570415 SNELDSSGEK0.991unsp
PVX_123570      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India