PVX_124160 | ATP-dependent protease subunit ClpQ, putative

_IDPredictionOTHERSPmTPCS_Position
PVX_124160mTP0.2348710.0042450.760884CS pos: 24-25. RNY-FA. Pr: 0.2704
No Results

  • Fasta :-

    >PVX_124160 MFVRHLSGLIRVPPAIGRAAQRNYFAPTERLLPPRHGTTILCVRKNNEVCLIGDGMVSQG TMIVKGNAKKIRRLKDNILMGFAGATADCFTLLDKFETKIDEYPNQLLRSCVELAKLWRT DRYLRHLEAVLIVADKDVLLEVTGNGDVLEPSGNVLGTGSGGPYAIAAARALYDVENLSA KDIAYKAMNIAADMCCHTNNNFICETL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PVX_124160.fa Sequence name : PVX_124160 Sequence length : 207 VALUES OF COMPUTED PARAMETERS Coef20 : 4.330 CoefTot : -1.322 ChDiff : 3 ZoneTo : 47 KR : 8 DE : 1 CleavSite : 40 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.147 1.300 0.135 0.534 MesoH : -0.738 0.352 -0.357 0.228 MuHd_075 : 47.636 20.941 12.269 9.367 MuHd_095 : 43.238 20.446 9.895 9.861 MuHd_100 : 43.303 24.596 9.338 11.000 MuHd_105 : 49.317 31.869 12.214 12.536 Hmax_075 : 11.200 13.533 3.124 4.282 Hmax_095 : 10.150 8.662 1.508 4.865 Hmax_100 : 16.300 16.400 3.164 6.800 Hmax_105 : 15.400 19.600 3.505 7.420 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0230 0.9770 DFMC : 0.0356 0.9644 This protein is probably imported in mitochondria. f(Ser) = 0.0213 f(Arg) = 0.1489 CMi = 0.07639 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 207 PVX_124160 MFVRHLSGLIRVPPAIGRAAQRNYFAPTERLLPPRHGTTILCVRKNNEVCLIGDGMVSQGTMIVKGNAKKIRRLKDNILM 80 GFAGATADCFTLLDKFETKIDEYPNQLLRSCVELAKLWRTDRYLRHLEAVLIVADKDVLLEVTGNGDVLEPSGNVLGTGS 160 GGPYAIAAARALYDVENLSAKDIAYKAMNIAADMCCHTNNNFICETL 240 ................................................................................ 80 ................................................................................ 160 ............................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PVX_124160 4 ---MFVR|HL 0.112 . PVX_124160 11 HLSGLIR|VP 0.097 . PVX_124160 18 VPPAIGR|AA 0.093 . PVX_124160 22 IGRAAQR|NY 0.089 . PVX_124160 30 YFAPTER|LL 0.078 . PVX_124160 35 ERLLPPR|HG 0.103 . PVX_124160 44 TTILCVR|KN 0.077 . PVX_124160 45 TILCVRK|NN 0.087 . PVX_124160 65 QGTMIVK|GN 0.066 . PVX_124160 69 IVKGNAK|KI 0.065 . PVX_124160 70 VKGNAKK|IR 0.080 . PVX_124160 72 GNAKKIR|RL 0.152 . PVX_124160 73 NAKKIRR|LK 0.171 . PVX_124160 75 KKIRRLK|DN 0.167 . PVX_124160 95 CFTLLDK|FE 0.058 . PVX_124160 99 LDKFETK|ID 0.060 . PVX_124160 109 YPNQLLR|SC 0.099 . PVX_124160 116 SCVELAK|LW 0.062 . PVX_124160 119 ELAKLWR|TD 0.085 . PVX_124160 122 KLWRTDR|YL 0.320 . PVX_124160 125 RTDRYLR|HL 0.285 . PVX_124160 136 VLIVADK|DV 0.076 . PVX_124160 170 YAIAAAR|AL 0.129 . PVX_124160 181 VENLSAK|DI 0.083 . PVX_124160 186 AKDIAYK|AM 0.067 . ____________________________^_________________

  • Fasta :-

    >PVX_124160 ATACGTAGTTTCGTCAACCCCACCTGTGCAGGGGCACATTTGCTTTTCTCCATCCTGCGC ATGCAGGCACCTTTTGTGTATCTCCTTCCCACGCGCACATGTAGCGATCGTAAAAATAAA ATAAAGTAAATAAATAAAACCCCATTTGCTGCTTCCATCCAGTTTGTTAATTTTCTTTTT AAGGGAGATACTGAGGAGCCTACCACCGCGTTCTCCTCCCCGAGGCCCATTTCAACGCCA CCCACGGGTTTCCCCTCCTCTTCTTTATTTGCGCAAAGCCAGGCGAAAGAAAAAAAAATG TTTGTAAGGCACCTCTCAGGCTTGATTAGGGTTCCCCCGGCGATCGGCCGAGCGGCACAG AGAAACTACTTCGCCCCCACGGAAAGGCTCCTCCCGCCGCGACACGGCACGACCATACTG TGCGTGCGCAAGAACAACGAAGTGTGTCTAATTGGAGATGGCATGGTCTCTCAAGGAACA ATGATCGTCAAGGGGAACGCCAAAAAAATAAGACGGCTGAAGGACAACATTTTGATGGGG TTCGCCGGGGCCACGGCGGACTGCTTCACCCTGCTGGATAAGTTCGAGACGAAAATCGAC GAATACCCAAATCAGCTTCTCCGCAGCTGCGTCGAACTAGCTAAGCTGTGGAGGACGGAC AGGTACCTGCGACACCTGGAGGCAGTCCTAATAGTGGCGGACAAAGACGTGCTGTTGGAG GTAACAGGCAACGGAGACGTCCTGGAACCATCTGGAAATGTCCTGGGCACAGGATCGGGG GGCCCATATGCCATAGCAGCAGCCAGGGCACTCTACGACGTGGAGAATCTCAGCGCCAAG GACATCGCCTACAAAGCGATGAACATTGCTGCGGACATGTGTTGCCACACGAACAACAAT TTTATATGCGAAACGCTTTGA
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  • Fasta :-

    MFVRHLSGLIRVPPAIGRAAQRNYFAPTERLLPPRHGTTILCVRKNNEVCLIGDGMVSQG TMIVKGNAKKIRRLKDNILMGFAGATADCFTLLDKFETKIDEYPNQLLRSCVELAKLWRT DRYLRHLEAVLIVADKDVLLEVTGNGDVLEPSGNVLGTGSGGPYAIAAARALYDVENLSA KDIAYKAMNIAADMCCHTNNNFICETL

  • title: active site
  • coordinates: T38,D54,M56,K70,S160
No Results
No Results
IDSitePeptideScoreMethod
PVX_124160179 SVENLSAKDI0.996unsp
PVX_124160      


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India