PY17X_0703000 | rhomboid protease ROM3, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PY17X_0703000OTHER1.0000000.0000000.000000
No Results

  • Fasta :-

    >PY17X_0703000 MSNKYAENDENSNLLPGTTELIEKNAQNKFYDVLFPQISLNRIIVWISFFQIIIYILSCL LSENLTVPNVDVLMFLGATYGPSVKQGELWRLLFPIFLHANWWHLIINIICILNLGLVIE TKYKKKRFLLIYFLSGFIGNTLTIICNPCQLAVGASTSGFGLIGCSIMEIFLAWKNLSKK AQNYYMFNICIFLVFFLFVSFSPTVDFFGHIGGFVCGAFLACHYNKFLGYDIFQECLHYG FASICALIIFYLPLRLFILNMPCEFV
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PY17X_0703000.fa Sequence name : PY17X_0703000 Sequence length : 266 VALUES OF COMPUTED PARAMETERS Coef20 : 2.981 CoefTot : -0.151 ChDiff : 1 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.488 2.459 0.501 0.861 MesoH : 1.014 1.337 0.097 0.576 MuHd_075 : 19.423 15.378 5.712 4.535 MuHd_095 : 7.504 3.775 2.826 1.860 MuHd_100 : 10.744 2.539 3.178 0.959 MuHd_105 : 17.213 7.081 4.748 1.649 Hmax_075 : 1.983 7.583 -1.376 3.477 Hmax_095 : -7.262 -4.638 -4.098 0.227 Hmax_100 : -7.700 -5.000 -4.488 0.260 Hmax_105 : -7.117 -4.200 -3.214 0.257 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9754 0.0246 DFMC : 0.9451 0.0549
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 266 PY17X_0703000 MSNKYAENDENSNLLPGTTELIEKNAQNKFYDVLFPQISLNRIIVWISFFQIIIYILSCLLSENLTVPNVDVLMFLGATY 80 GPSVKQGELWRLLFPIFLHANWWHLIINIICILNLGLVIETKYKKKRFLLIYFLSGFIGNTLTIICNPCQLAVGASTSGF 160 GLIGCSIMEIFLAWKNLSKKAQNYYMFNICIFLVFFLFVSFSPTVDFFGHIGGFVCGAFLACHYNKFLGYDIFQECLHYG 240 FASICALIIFYLPLRLFILNMPCEFV 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .......................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PY17X_0703000 4 ---MSNK|YA 0.090 . PY17X_0703000 24 TTELIEK|NA 0.066 . PY17X_0703000 29 EKNAQNK|FY 0.090 . PY17X_0703000 42 PQISLNR|II 0.073 . PY17X_0703000 85 TYGPSVK|QG 0.060 . PY17X_0703000 91 KQGELWR|LL 0.100 . PY17X_0703000 122 GLVIETK|YK 0.062 . PY17X_0703000 124 VIETKYK|KK 0.059 . PY17X_0703000 125 IETKYKK|KR 0.068 . PY17X_0703000 126 ETKYKKK|RF 0.081 . PY17X_0703000 127 TKYKKKR|FL 0.341 . PY17X_0703000 175 EIFLAWK|NL 0.062 . PY17X_0703000 179 AWKNLSK|KA 0.062 . PY17X_0703000 180 WKNLSKK|AQ 0.110 . PY17X_0703000 226 LACHYNK|FL 0.096 . PY17X_0703000 255 IFYLPLR|LF 0.070 . ____________________________^_________________

  • Fasta :-

    >PY17X_0703000 ATGTCAAATAAATATGCGGAAAATGATGAAAATTCGAATTTGTTACCTGGGACTACTGAG CTGATTGAGAAAAATGCACAAAATAAATTTTACGACGTTTTATTTCCTCAAATATCGCTA AATAGAATTATTGTGTGGATTAGTTTTTTCCAAATAATAATTTATATATTGAGTTGCTTA TTAAGTGAAAACCTAACAGTTCCTAATGTAGACGTCTTGATGTTCCTTGGGGCTACATAC GGGCCATCTGTCAAGCAAGGAGAATTATGGAGACTACTATTTCCTATATTTTTGCACGCC AATTGGTGGCATTTAATTATAAATATTATATGTATTTTAAATTTAGGGTTAGTAATTGAG ACTAAATATAAAAAAAAAAGGTTTTTATTAATATATTTTTTATCGGGATTTATTGGAAAT ACATTAACAATAATTTGCAACCCTTGCCAATTGGCAGTTGGAGCATCAACTAGTGGGTTT GGATTAATTGGATGTTCTATCATGGAAATATTTTTAGCTTGGAAAAATTTATCGAAGAAA GCACAAAATTATTATATGTTTAATATATGTATTTTTTTAGTATTTTTTTTATTTGTAAGT TTTTCTCCAACTGTTGATTTTTTTGGACATATAGGAGGATTTGTGTGCGGGGCTTTTTTG GCATGTCATTACAACAAATTTTTGGGATATGATATTTTTCAGGAATGTTTACATTATGGA TTTGCCTCAATTTGTGCTTTAATTATTTTTTATTTGCCACTTCGTCTATTCATTTTGAAT ATGCCATGTGAATTTGTTTAG
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  • Fasta :-

    MSNKYAENDENSNLLPGTTELIEKNAQNKFYDVLFPQISLNRIIVWISFFQIIIYILSCL LSENLTVPNVDVLMFLGATYGPSVKQGELWRLLFPIFLHANWWHLIINIICILNLGLVIE TKYKKKRFLLIYFLSGFIGNTLTIICNPCQLAVGASTSGFGLIGCSIMEIFLAWKNLSKK AQNYYMFNICIFLVFFLFVSFSPTVDFFGHIGGFVCGAFLACHYNKFLGYDIFQECLHYG FASICALIIFYLPLRLFILNMPCEFV

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PY17X_0703000


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India