PY17X_0935500 | rhomboid protease ROM1, putative

_IDPredictionOTHERSPmTPCS_Position
PY17X_0935500OTHER0.9999660.0000020.000032
No Results

  • Fasta :-

    >PY17X_0935500 MSNIHTLAEYRDVDGENLPFNRTPGYYASQSSFIQRSKPIDVVNLIFPHFTWKSFVIAVS IIQIIVFIISLSINPGEFLTPSGSTLITLGANVGSKIKNGEIHRLILPIFLHANIFHTFF NVFFQLRMGFTLEKNYGILQVAILYFVSGIYGNILSSSVTYCTIKVGASTSGMGLLGIVA SELMLLWHIIRHRERVVFNILFFTLISILYYFTFNGSNIDHVGHLGGLLSGISIGMLYNE KMENKPTWYNNVKIASYVCLVLLAIIPTVVLFAVPRTC
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PY17X_0935500.fa Sequence name : PY17X_0935500 Sequence length : 278 VALUES OF COMPUTED PARAMETERS Coef20 : 3.234 CoefTot : 0.002 ChDiff : 5 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.371 3.047 0.604 0.942 MesoH : 0.742 1.120 -0.021 0.469 MuHd_075 : 10.010 13.127 3.104 4.364 MuHd_095 : 3.627 7.457 3.517 0.881 MuHd_100 : 7.758 12.369 4.267 2.112 MuHd_105 : 9.230 13.032 3.765 2.254 Hmax_075 : -7.350 8.517 -2.523 3.010 Hmax_095 : -5.800 5.500 -2.093 1.420 Hmax_100 : 2.400 10.900 0.031 2.840 Hmax_105 : -4.317 7.800 -1.988 1.698 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9988 0.0012 DFMC : 0.9982 0.0018
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 278 PY17X_0935500 MSNIHTLAEYRDVDGENLPFNRTPGYYASQSSFIQRSKPIDVVNLIFPHFTWKSFVIAVSIIQIIVFIISLSINPGEFLT 80 PSGSTLITLGANVGSKIKNGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGILQVAILYFVSGIYGNILSSSVT 160 YCTIKVGASTSGMGLLGIVASELMLLWHIIRHRERVVFNILFFTLISILYYFTFNGSNIDHVGHLGGLLSGISIGMLYNE 240 KMENKPTWYNNVKIASYVCLVLLAIIPTVVLFAVPRTC 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PY17X_0935500 11 HTLAEYR|DV 0.146 . PY17X_0935500 22 ENLPFNR|TP 0.084 . PY17X_0935500 36 QSSFIQR|SK 0.146 . PY17X_0935500 38 SFIQRSK|PI 0.072 . PY17X_0935500 53 FPHFTWK|SF 0.092 . PY17X_0935500 96 GANVGSK|IK 0.070 . PY17X_0935500 98 NVGSKIK|NG 0.060 . PY17X_0935500 104 KNGEIHR|LI 0.087 . PY17X_0935500 127 NVFFQLR|MG 0.087 . PY17X_0935500 134 MGFTLEK|NY 0.067 . PY17X_0935500 165 VTYCTIK|VG 0.054 . PY17X_0935500 191 LLWHIIR|HR 0.092 . PY17X_0935500 193 WHIIRHR|ER 0.069 . PY17X_0935500 195 IIRHRER|VV 0.152 . PY17X_0935500 241 GMLYNEK|ME 0.052 . PY17X_0935500 245 NEKMENK|PT 0.063 . PY17X_0935500 253 TWYNNVK|IA 0.076 . PY17X_0935500 276 VLFAVPR|TC 0.087 . ____________________________^_________________

  • Fasta :-

    >PY17X_0935500 ATGAGTAACATCCATACATTAGCAGAGTATAGGGATGTGGATGGCGAGAATCTCCCATTC AATAGAACACCAGGGTATTATGCGTCGCAGAGTAGTTTTATTCAAAGATCAAAACCTATT GACGTGGTTAACTTGATTTTCCCCCATTTTACATGGAAAAGTTTTGTCATAGCTGTTTCC ATAATACAGATTATCGTTTTTATAATATCTCTTAGTATAAATCCTGGAGAATTTTTAACT CCTTCTGGCAGCACATTAATAACACTAGGAGCAAATGTTGGATCAAAAATAAAAAATGGA GAAATACATAGATTAATATTGCCTATATTTTTGCATGCAAATATATTTCACACATTTTTT AATGTGTTTTTTCAATTAAGAATGGGATTTACTCTTGAAAAAAATTATGGAATATTACAA GTTGCGATTTTATATTTTGTATCGGGGATATATGGAAATATACTATCATCATCTGTTACA TATTGTACAATAAAAGTGGGTGCAAGTACATCAGGCATGGGGTTATTAGGAATAGTAGCA TCCGAACTAATGTTGTTATGGCATATTATTAGACATAGAGAAAGAGTAGTATTTAATATC TTGTTTTTTACGTTAATTTCCATTTTATATTATTTTACCTTTAATGGATCAAATATAGAT CATGTTGGTCATTTAGGAGGTCTTTTATCTGGTATATCTATTGGAATGCTTTATAATGAG AAGATGGAAAACAAACCAACATGGTATAATAATGTAAAGATTGCTTCTTATGTATGTTTA GTGCTGCTAGCTATAATCCCAACTGTTGTTTTGTTTGCTGTTCCTCGTACATGCTAG
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  • Fasta :-

    MSNIHTLAEYRDVDGENLPFNRTPGYYASQSSFIQRSKPIDVVNLIFPHFTWKSFVIAVS IIQIIVFIISLSINPGEFLTPSGSTLITLGANVGSKIKNGEIHRLILPIFLHANIFHTFF NVFFQLRMGFTLEKNYGILQVAILYFVSGIYGNILSSSVTYCTIKVGASTSGMGLLGIVA SELMLLWHIIRHRERVVFNILFFTLISILYYFTFNGSNIDHVGHLGGLLSGISIGMLYNE KMENKPTWYNNVKIASYVCLVLLAIIPTVVLFAVPRTC

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PY17X_0935500


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India