PY17X_1115900 | rhomboid protease ROM9, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PY17X_1115900OTHER0.9885910.0000230.011386
No Results

  • Fasta :-

    >PY17X_1115900 MQKDIGMKLVGKGNTLTKNVHVYVHKRKLNKSNIFSNTSKENRYKDDKNNLRDNIYFLNN KINNERNASTIYITANPSTSGFGKYVGNYSVRRFSKYSDKNIFNEQKRKCESLLFNFQNF EIKNYLLKLNKGRLQNSNIQKKIKNIIIKFEENYKNILYDKYSFFKKLCKEKSDFYKYRI SKINRNNYKTNLNFPINFLNIFISNNNNNNNKALKELINVGKYRGKLFLNNIPTYYKYGI KNIPYFKAVLMQHYNKSPVTYSLIFLHFFVYFLWINAKPDNMSYSYFSPAPIKSHSFSLL TSEFMYKYFCCSLKSLREKQLYTLVTNIISHNTIQSFLLNTISLFYIGRSLEILINSKNF FFTYIVSGIISSYIQILYQKNSSYGYKNVYVLGASGSISSILATYTFIHPNHKIYLYGVL GLPLALFSSLYFLNELYSIIANKNDNIGHASHLTGMFLGILYYYSYVNKKFRI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PY17X_1115900.fa Sequence name : PY17X_1115900 Sequence length : 473 VALUES OF COMPUTED PARAMETERS Coef20 : 3.364 CoefTot : -2.515 ChDiff : 44 ZoneTo : 40 KR : 9 DE : 1 CleavSite : 37 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.994 1.871 0.293 0.812 MesoH : 0.506 0.664 -0.125 0.410 MuHd_075 : 42.662 25.034 13.227 8.702 MuHd_095 : 30.660 22.214 10.316 6.826 MuHd_100 : 33.994 23.386 10.502 7.328 MuHd_105 : 35.378 23.392 11.776 7.367 Hmax_075 : 14.350 15.200 3.273 5.610 Hmax_095 : 14.500 15.200 3.273 5.610 Hmax_100 : 14.500 14.800 3.175 5.610 Hmax_105 : 14.933 17.733 2.872 6.253 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2491 0.7509 DFMC : 0.3912 0.6088 This protein is probably imported in mitochondria. f(Ser) = 0.0750 f(Arg) = 0.0250 CMi = 0.71429 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 473 PY17X_1115900 MQKDIGMKLVGKGNTLTKNVHVYVHKRKLNKSNIFSNTSKENRYKDDKNNLRDNIYFLNNKINNERNASTIYITANPSTS 80 GFGKYVGNYSVRRFSKYSDKNIFNEQKRKCESLLFNFQNFEIKNYLLKLNKGRLQNSNIQKKIKNIIIKFEENYKNILYD 160 KYSFFKKLCKEKSDFYKYRISKINRNNYKTNLNFPINFLNIFISNNNNNNNKALKELINVGKYRGKLFLNNIPTYYKYGI 240 KNIPYFKAVLMQHYNKSPVTYSLIFLHFFVYFLWINAKPDNMSYSYFSPAPIKSHSFSLLTSEFMYKYFCCSLKSLREKQ 320 LYTLVTNIISHNTIQSFLLNTISLFYIGRSLEILINSKNFFFTYIVSGIISSYIQILYQKNSSYGYKNVYVLGASGSISS 400 ILATYTFIHPNHKIYLYGVLGLPLALFSSLYFLNELYSIIANKNDNIGHASHLTGMFLGILYYYSYVNKKFRI 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ......................................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PY17X_1115900 3 ----MQK|DI 0.101 . PY17X_1115900 8 QKDIGMK|LV 0.088 . PY17X_1115900 12 GMKLVGK|GN 0.062 . PY17X_1115900 18 KGNTLTK|NV 0.087 . PY17X_1115900 26 VHVYVHK|RK 0.059 . PY17X_1115900 27 HVYVHKR|KL 0.207 . PY17X_1115900 28 VYVHKRK|LN 0.081 . PY17X_1115900 31 HKRKLNK|SN 0.091 . PY17X_1115900 40 IFSNTSK|EN 0.066 . PY17X_1115900 43 NTSKENR|YK 0.145 . PY17X_1115900 45 SKENRYK|DD 0.079 . PY17X_1115900 48 NRYKDDK|NN 0.059 . PY17X_1115900 52 DDKNNLR|DN 0.096 . PY17X_1115900 61 IYFLNNK|IN 0.056 . PY17X_1115900 66 NKINNER|NA 0.114 . PY17X_1115900 84 STSGFGK|YV 0.122 . PY17X_1115900 92 VGNYSVR|RF 0.090 . PY17X_1115900 93 GNYSVRR|FS 0.170 . PY17X_1115900 96 SVRRFSK|YS 0.286 . PY17X_1115900 100 FSKYSDK|NI 0.071 . PY17X_1115900 107 NIFNEQK|RK 0.060 . PY17X_1115900 108 IFNEQKR|KC 0.203 . PY17X_1115900 109 FNEQKRK|CE 0.082 . PY17X_1115900 123 FQNFEIK|NY 0.062 . PY17X_1115900 128 IKNYLLK|LN 0.063 . PY17X_1115900 131 YLLKLNK|GR 0.054 . PY17X_1115900 133 LKLNKGR|LQ 0.082 . PY17X_1115900 141 QNSNIQK|KI 0.077 . PY17X_1115900 142 NSNIQKK|IK 0.130 . PY17X_1115900 144 NIQKKIK|NI 0.081 . PY17X_1115900 149 IKNIIIK|FE 0.079 . PY17X_1115900 155 KFEENYK|NI 0.055 . PY17X_1115900 161 KNILYDK|YS 0.062 . PY17X_1115900 166 DKYSFFK|KL 0.072 . PY17X_1115900 167 KYSFFKK|LC 0.103 . PY17X_1115900 170 FFKKLCK|EK 0.061 . PY17X_1115900 172 KKLCKEK|SD 0.081 . PY17X_1115900 177 EKSDFYK|YR 0.081 . PY17X_1115900 179 SDFYKYR|IS 0.122 . PY17X_1115900 182 YKYRISK|IN 0.113 . PY17X_1115900 185 RISKINR|NN 0.103 . PY17X_1115900 189 INRNNYK|TN 0.063 . PY17X_1115900 212 NNNNNNK|AL 0.070 . PY17X_1115900 215 NNNKALK|EL 0.073 . PY17X_1115900 222 ELINVGK|YR 0.074 . PY17X_1115900 224 INVGKYR|GK 0.095 . PY17X_1115900 226 VGKYRGK|LF 0.063 . PY17X_1115900 237 NIPTYYK|YG 0.064 . PY17X_1115900 241 YYKYGIK|NI 0.055 . PY17X_1115900 247 KNIPYFK|AV 0.072 . PY17X_1115900 256 LMQHYNK|SP 0.070 . PY17X_1115900 278 FLWINAK|PD 0.063 . PY17X_1115900 293 FSPAPIK|SH 0.087 . PY17X_1115900 307 TSEFMYK|YF 0.078 . PY17X_1115900 314 YFCCSLK|SL 0.081 . PY17X_1115900 317 CSLKSLR|EK 0.068 . PY17X_1115900 319 LKSLREK|QL 0.083 . PY17X_1115900 349 SLFYIGR|SL 0.151 . PY17X_1115900 358 EILINSK|NF 0.052 . PY17X_1115900 380 IQILYQK|NS 0.064 . PY17X_1115900 387 NSSYGYK|NV 0.096 . PY17X_1115900 413 FIHPNHK|IY 0.061 . PY17X_1115900 443 YSIIANK|ND 0.066 . PY17X_1115900 469 YYSYVNK|KF 0.070 . PY17X_1115900 470 YSYVNKK|FR 0.104 . PY17X_1115900 472 YVNKKFR|I- 0.121 . ____________________________^_________________

  • Fasta :-

    >PY17X_1115900 ATGCAAAAGGACATCGGAATGAAATTAGTGGGGAAGGGAAATACACTAACAAAAAATGTG CATGTGTATGTGCATAAAAGAAAATTAAATAAAAGTAATATTTTTTCTAATACATCGAAA GAGAACAGATATAAAGATGATAAAAACAATTTAAGAGACAATATATATTTTTTAAATAAT AAAATTAATAATGAGCGAAATGCTTCCACTATTTATATAACAGCTAATCCATCAACAAGT GGTTTTGGTAAATATGTTGGGAATTACTCAGTACGTAGATTTTCAAAATATTCTGACAAA AATATTTTTAATGAACAGAAACGGAAATGTGAGTCTTTATTATTTAATTTTCAAAATTTT GAAATAAAAAATTATTTGTTAAAATTAAATAAAGGAAGATTACAAAATAGTAATATTCAA AAGAAAATAAAAAATATAATTATAAAATTTGAAGAAAATTATAAAAATATATTATATGAC AAATATTCATTTTTTAAAAAATTGTGTAAAGAAAAAAGTGATTTTTATAAATATAGAATA AGTAAAATAAATCGTAACAATTATAAGACCAATTTAAATTTTCCTATAAATTTTTTAAAT ATATTTATAAGTAATAATAATAATAATAATAATAAAGCTTTAAAGGAGTTGATAAATGTT GGAAAATATAGAGGGAAATTATTTTTAAATAATATCCCAACATATTATAAATATGGAATA AAAAATATACCATATTTTAAAGCAGTATTAATGCAGCATTATAATAAATCTCCAGTTACT TATAGTTTAATATTTTTACATTTTTTTGTTTATTTTTTATGGATAAATGCTAAACCTGAT AATATGTCTTATAGTTATTTTAGCCCAGCCCCGATAAAATCACATTCTTTTTCATTATTA ACATCAGAATTTATGTATAAATATTTTTGTTGTAGTTTGAAAAGCTTAAGAGAAAAACAA TTATATACTTTAGTAACTAACATAATAAGTCACAATACTATACAATCTTTTTTACTAAAT ACAATTTCTTTATTTTATATTGGACGTTCTTTAGAAATTTTAATAAATTCAAAAAACTTT TTTTTTACATATATAGTTAGTGGAATTATTTCATCTTATATACAAATTTTATATCAAAAG AATTCAAGTTATGGTTATAAAAATGTTTATGTTCTTGGTGCTAGCGGAAGTATAAGCTCT ATATTAGCTACATACACATTTATTCACCCAAATCACAAAATATATTTATATGGTGTTCTA GGCTTACCATTAGCCCTTTTTTCGTCGCTTTACTTTTTAAACGAGCTATACAGCATTATA GCAAACAAGAATGACAATATAGGGCACGCATCACATTTGACAGGAATGTTTCTTGGAATT CTATATTATTATTCTTATGTTAATAAAAAATTTCGAATATAA
  • Download Fasta

  • Fasta :-

    MQKDIGMKLVGKGNTLTKNVHVYVHKRKLNKSNIFSNTSKENRYKDDKNNLRDNIYFLNN KINNERNASTIYITANPSTSGFGKYVGNYSVRRFSKYSDKNIFNEQKRKCESLLFNFQNF EIKNYLLKLNKGRLQNSNIQKKIKNIIIKFEENYKNILYDKYSFFKKLCKEKSDFYKYRI SKINRNNYKTNLNFPINFLNIFISNNNNNNNKALKELINVGKYRGKLFLNNIPTYYKYGI KNIPYFKAVLMQHYNKSPVTYSLIFLHFFVYFLWINAKPDNMSYSYFSPAPIKSHSFSLL TSEFMYKYFCCSLKSLREKQLYTLVTNIISHNTIQSFLLNTISLFYIGRSLEILINSKNF FFTYIVSGIISSYIQILYQKNSSYGYKNVYVLGASGSISSILATYTFIHPNHKIYLYGVL GLPLALFSSLYFLNELYSIIANKNDNIGHASHLTGMFLGILYYYSYVNKKFRI

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PY17X_111590095 SVRRFSKYSD0.998unspPY17X_111590098 SFSKYSDKNI0.991unsp
PY17X_1115900


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India