PY17X_1118900 | rhomboid protease ROM10, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PY17X_1118900OTHER0.9999540.0000140.000032
No Results

  • Fasta :-

    >PY17X_1118900 MRFLMNYQNIPNDDVFDDSELLLIKYARSFYKTFKKNIKFIQILFPSYKPHYVTIIFSIF LYIFFFGYNIYFFNKYNPLFIREDVLINIGINREIISNKLHFHKLITATLVHPNIWSLII NTYYLINLGITVEKGYGRIHTIALMLFSSICGNLLMCATANCNEAQLGTSTILSGIMGLF LQEVTSNFKKIKGKIEIIGTYLFTIVPMYLTIAMFPHNGNIMGNLGGLFGGYCYPYIFNV IRMNRGPGNTARLVHIGLMGLFLISLILSLLIIKC
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PY17X_1118900.fa Sequence name : PY17X_1118900 Sequence length : 275 VALUES OF COMPUTED PARAMETERS Coef20 : 3.191 CoefTot : -0.710 ChDiff : 11 ZoneTo : 12 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.488 2.759 0.523 0.926 MesoH : 0.643 0.939 -0.035 0.455 MuHd_075 : 35.519 21.128 8.875 5.825 MuHd_095 : 39.312 16.431 8.822 6.312 MuHd_100 : 28.130 12.055 6.133 4.733 MuHd_105 : 8.946 5.668 2.850 3.255 Hmax_075 : 8.750 8.633 -0.554 3.640 Hmax_095 : 7.000 7.600 -1.759 3.050 Hmax_100 : 7.000 7.600 -1.759 3.050 Hmax_105 : -9.700 3.267 -3.422 2.520 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9671 0.0329 DFMC : 0.9660 0.0340
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 275 PY17X_1118900 MRFLMNYQNIPNDDVFDDSELLLIKYARSFYKTFKKNIKFIQILFPSYKPHYVTIIFSIFLYIFFFGYNIYFFNKYNPLF 80 IREDVLINIGINREIISNKLHFHKLITATLVHPNIWSLIINTYYLINLGITVEKGYGRIHTIALMLFSSICGNLLMCATA 160 NCNEAQLGTSTILSGIMGLFLQEVTSNFKKIKGKIEIIGTYLFTIVPMYLTIAMFPHNGNIMGNLGGLFGGYCYPYIFNV 240 IRMNRGPGNTARLVHIGLMGLFLISLILSLLIIKC 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PY17X_1118900 2 -----MR|FL 0.126 . PY17X_1118900 25 SELLLIK|YA 0.065 . PY17X_1118900 28 LLIKYAR|SF 0.157 . PY17X_1118900 32 YARSFYK|TF 0.072 . PY17X_1118900 35 SFYKTFK|KN 0.068 . PY17X_1118900 36 FYKTFKK|NI 0.097 . PY17X_1118900 39 TFKKNIK|FI 0.084 . PY17X_1118900 49 ILFPSYK|PH 0.062 . PY17X_1118900 75 NIYFFNK|YN 0.060 . PY17X_1118900 82 YNPLFIR|ED 0.073 . PY17X_1118900 93 INIGINR|EI 0.088 . PY17X_1118900 99 REIISNK|LH 0.072 . PY17X_1118900 104 NKLHFHK|LI 0.075 . PY17X_1118900 134 LGITVEK|GY 0.078 . PY17X_1118900 138 VEKGYGR|IH 0.091 . PY17X_1118900 189 EVTSNFK|KI 0.056 . PY17X_1118900 190 VTSNFKK|IK 0.182 . PY17X_1118900 192 SNFKKIK|GK 0.098 . PY17X_1118900 194 FKKIKGK|IE 0.072 . PY17X_1118900 242 YIFNVIR|MN 0.098 . PY17X_1118900 245 NVIRMNR|GP 0.224 . PY17X_1118900 252 GPGNTAR|LV 0.283 . PY17X_1118900 274 LSLLIIK|C- 0.057 . ____________________________^_________________

  • Fasta :-

    >PY17X_1118900 ATGCGATTCCTTATGAATTATCAAAATATTCCAAATGATGATGTTTTTGATGACTCAGAG TTGTTACTTATAAAATATGCAAGATCTTTTTATAAAACCTTTAAAAAAAATATTAAATTT ATTCAAATATTATTCCCTTCTTATAAGCCTCATTATGTTACCATAATATTTTCTATATTC TTATATATATTTTTCTTTGGATATAACATTTATTTTTTTAATAAATACAACCCTTTATTT ATTAGAGAAGATGTGTTAATAAATATTGGAATAAATAGGGAAATCATTTCAAATAAATTA CATTTCCACAAACTTATAACTGCGACCTTAGTTCATCCCAATATATGGAGTTTGATAATT AATACATATTACTTAATCAACCTTGGGATAACTGTTGAGAAAGGATATGGACGGATTCAC ACTATAGCATTAATGTTGTTTAGTTCGATATGTGGGAATTTATTAATGTGTGCAACAGCA AATTGCAATGAGGCCCAATTAGGAACCAGCACTATACTATCTGGAATTATGGGTCTTTTT TTACAAGAAGTAACATCGAATTTTAAAAAAATTAAAGGAAAAATCGAAATTATAGGGACT TATTTATTTACGATCGTACCAATGTATTTGACAATAGCCATGTTCCCACATAATGGAAAC ATTATGGGAAACCTTGGAGGACTGTTCGGGGGCTATTGCTACCCATACATTTTTAATGTA ATTAGAATGAATAGAGGGCCAGGAAATACCGCAAGATTAGTACACATTGGATTAATGGGC TTATTTTTAATTTCGTTAATACTTAGTCTGTTAATTATTAAGTGCTAA
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  • Fasta :-

    MRFLMNYQNIPNDDVFDDSELLLIKYARSFYKTFKKNIKFIQILFPSYKPHYVTIIFSIF LYIFFFGYNIYFFNKYNPLFIREDVLINIGINREIISNKLHFHKLITATLVHPNIWSLII NTYYLINLGITVEKGYGRIHTIALMLFSSICGNLLMCATANCNEAQLGTSTILSGIMGLF LQEVTSNFKKIKGKIEIIGTYLFTIVPMYLTIAMFPHNGNIMGNLGGLFGGYCYPYIFNV IRMNRGPGNTARLVHIGLMGLFLISLILSLLIIKC

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PY17X_1118900


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India