PY17X_1136100 | rhomboid protease ROM7, putative

_IDPredictionOTHERSPmTPCS_Position
PY17X_1136100SP0.0258130.9728270.001360CS pos: 16-17. ARG-NS. Pr: 0.5405
No Results

  • Fasta :-

    >PY17X_1136100 MNLLILFIFIIYIARGNSLHYNKINSKGITTFINTKNTILKNEYKIYRFKKYNNVERRIY SFKENVLSLFNTVKDKEKITNLLENISNNVKNKFPNRFTYYNYLFNKCKLDRILIVINTL LYLYLNRVDKNEEKKIFFTKGNLVQIKDEQKAEKYQCNYYDIYKNKNYKTLFSSIFIHKN ILHLYFNMSSLMSIYKMVSPIYSNSQILITYLLSGFLSNLISYIYYIKPQKKNIFLKDII DQNYYSRNTPLNKPNKIICGSSSAIYSLYGMYITHMIFFYIKNNYIVNTGFLYNIFYSFL SSLLLENVSHFNHVLGFMCGFVMSSTLILFDNN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PY17X_1136100.fa Sequence name : PY17X_1136100 Sequence length : 333 VALUES OF COMPUTED PARAMETERS Coef20 : 4.429 CoefTot : -1.333 ChDiff : 24 ZoneTo : 42 KR : 5 DE : 0 CleavSite : 17 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.412 2.112 0.449 0.742 MesoH : 0.827 0.884 -0.079 0.460 MuHd_075 : 27.234 22.564 9.466 7.368 MuHd_095 : 22.405 18.518 6.973 6.264 MuHd_100 : 21.036 20.590 7.105 6.443 MuHd_105 : 20.954 20.721 7.517 6.200 Hmax_075 : 8.517 15.983 1.169 4.492 Hmax_095 : 1.400 10.763 1.126 3.500 Hmax_100 : 14.500 12.700 0.256 4.220 Hmax_105 : 9.917 15.400 1.033 4.820 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2792 0.7208 DFMC : 0.1922 0.8078 This protein is probably imported in mitochondria. f(Ser) = 0.0476 f(Arg) = 0.0238 CMi = 0.46083 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 333 PY17X_1136100 MNLLILFIFIIYIARGNSLHYNKINSKGITTFINTKNTILKNEYKIYRFKKYNNVERRIYSFKENVLSLFNTVKDKEKIT 80 NLLENISNNVKNKFPNRFTYYNYLFNKCKLDRILIVINTLLYLYLNRVDKNEEKKIFFTKGNLVQIKDEQKAEKYQCNYY 160 DIYKNKNYKTLFSSIFIHKNILHLYFNMSSLMSIYKMVSPIYSNSQILITYLLSGFLSNLISYIYYIKPQKKNIFLKDII 240 DQNYYSRNTPLNKPNKIICGSSSAIYSLYGMYITHMIFFYIKNNYIVNTGFLYNIFYSFLSSLLLENVSHFNHVLGFMCG 320 FVMSSTLILFDNN 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PY17X_1136100 15 FIIYIAR|GN 0.086 . PY17X_1136100 23 NSLHYNK|IN 0.088 . PY17X_1136100 27 YNKINSK|GI 0.073 . PY17X_1136100 36 TTFINTK|NT 0.060 . PY17X_1136100 41 TKNTILK|NE 0.070 . PY17X_1136100 45 ILKNEYK|IY 0.062 . PY17X_1136100 48 NEYKIYR|FK 0.086 . PY17X_1136100 50 YKIYRFK|KY 0.071 . PY17X_1136100 51 KIYRFKK|YN 0.425 . PY17X_1136100 57 KYNNVER|RI 0.091 . PY17X_1136100 58 YNNVERR|IY 0.246 . PY17X_1136100 63 RRIYSFK|EN 0.073 . PY17X_1136100 74 SLFNTVK|DK 0.084 . PY17X_1136100 76 FNTVKDK|EK 0.066 . PY17X_1136100 78 TVKDKEK|IT 0.069 . PY17X_1136100 91 NISNNVK|NK 0.067 . PY17X_1136100 93 SNNVKNK|FP 0.077 . PY17X_1136100 97 KNKFPNR|FT 0.099 . PY17X_1136100 107 YNYLFNK|CK 0.060 . PY17X_1136100 109 YLFNKCK|LD 0.062 . PY17X_1136100 112 NKCKLDR|IL 0.093 . PY17X_1136100 127 LYLYLNR|VD 0.068 . PY17X_1136100 130 YLNRVDK|NE 0.163 . PY17X_1136100 134 VDKNEEK|KI 0.062 . PY17X_1136100 135 DKNEEKK|IF 0.126 . PY17X_1136100 140 KKIFFTK|GN 0.079 . PY17X_1136100 147 GNLVQIK|DE 0.086 . PY17X_1136100 151 QIKDEQK|AE 0.057 . PY17X_1136100 154 DEQKAEK|YQ 0.068 . PY17X_1136100 164 NYYDIYK|NK 0.055 . PY17X_1136100 166 YDIYKNK|NY 0.071 . PY17X_1136100 169 YKNKNYK|TL 0.075 . PY17X_1136100 179 SSIFIHK|NI 0.064 . PY17X_1136100 196 SLMSIYK|MV 0.099 . PY17X_1136100 228 SYIYYIK|PQ 0.057 . PY17X_1136100 231 YYIKPQK|KN 0.056 . PY17X_1136100 232 YIKPQKK|NI 0.093 . PY17X_1136100 237 KKNIFLK|DI 0.112 . PY17X_1136100 247 DQNYYSR|NT 0.078 . PY17X_1136100 253 RNTPLNK|PN 0.063 . PY17X_1136100 256 PLNKPNK|II 0.076 . PY17X_1136100 282 MIFFYIK|NN 0.067 . ____________________________^_________________

  • Fasta :-

    >PY17X_1136100 ATGAATCTTTTAATTTTGTTCATATTTATAATATATATTGCAAGAGGGAATTCGTTGCAT TATAACAAAATAAATTCCAAAGGAATAACTACATTTATAAATACTAAAAATACTATTTTA AAAAATGAATACAAAATATATCGATTCAAAAAATATAATAATGTAGAGAGAAGGATATAT TCATTTAAGGAAAATGTTTTAAGTTTATTTAATACTGTGAAAGATAAAGAGAAAATAACC AATTTGCTTGAAAATATTTCAAATAATGTAAAAAATAAATTTCCTAATAGATTTACATAC TACAATTATTTATTTAATAAATGTAAATTAGACAGAATACTTATAGTAATAAACACACTG CTTTATTTATATTTAAATAGGGTTGATAAAAATGAAGAAAAAAAAATTTTTTTTACTAAG GGAAATTTAGTTCAAATAAAAGATGAACAGAAAGCTGAAAAATATCAATGTAATTATTAT GATATATATAAAAATAAGAATTATAAAACACTTTTCTCATCTATTTTTATCCATAAAAAT ATCTTACATTTATATTTTAATATGAGTTCCCTAATGTCCATATACAAAATGGTATCGCCA ATTTATTCAAATAGCCAAATACTTATTACATATTTATTATCTGGGTTTCTTTCCAATTTA ATATCTTATATTTACTATATAAAGCCACAAAAAAAAAATATTTTTTTAAAAGACATAATC GATCAAAATTATTATAGTCGTAATACACCCCTAAATAAGCCCAATAAAATAATTTGCGGA AGTAGTTCAGCTATATATTCCCTATATGGAATGTATATAACACATATGATTTTTTTTTAT ATTAAAAATAATTATATTGTAAATACAGGCTTCCTCTATAATATTTTCTATTCATTTTTA TCATCTCTGCTTTTAGAAAATGTTAGCCATTTTAACCATGTTTTGGGATTTATGTGTGGA TTTGTTATGTCGTCCACATTGATTTTGTTTGATAATAATTAA
  • Download Fasta

  • Fasta :-

    MNLLILFIFIIYIARGNSLHYNKINSKGITTFINTKNTILKNEYKIYRFKKYNNVERRIY SFKENVLSLFNTVKDKEKITNLLENISNNVKNKFPNRFTYYNYLFNKCKLDRILIVINTL LYLYLNRVDKNEEKKIFFTKGNLVQIKDEQKAEKYQCNYYDIYKNKNYKTLFSSIFIHKN ILHLYFNMSSLMSIYKMVSPIYSNSQILITYLLSGFLSNLISYIYYIKPQKKNIFLKDII DQNYYSRNTPLNKPNKIICGSSSAIYSLYGMYITHMIFFYIKNNYIVNTGFLYNIFYSFL SSLLLENVSHFNHVLGFMCGFVMSSTLILFDNN

    No Results
No Results
No Results
IDSitePeptideScoreMethod
PY17X_113610061 SRRIYSFKEN0.996unsp
PY17X_1136100


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India