PY17X_1236500 | proteasome subunit beta type-1, putative

_IDPredictionOTHERSPmTPCS_Position
PY17X_1236500OTHER0.9999370.0000340.000029
No Results

  • Fasta :-

    >PY17X_1236500 MEILQLNSNSVEKKKTEENEAAIEHARPSKRWNPYIDNGGTVIGLTGKDYVILAGDTRLS LSYSIYTRNCPKISKITDKCIIGSSGMQSDIKTLHSLLQKKIQLFYLEHSHYPSIHVIAK LLCVTLYSRRFFPYYTFNILAGIDEDGKGVLYSYDAIGSYYMSTHACTGSGSSLILPILD NRVEQKNQLIKNIDFNLRDDINFVKDAMTSATERDIYTGDQAEIYIIDNLGINTTLLDLK KD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PY17X_1236500.fa Sequence name : PY17X_1236500 Sequence length : 242 VALUES OF COMPUTED PARAMETERS Coef20 : 3.166 CoefTot : 0.000 ChDiff : -2 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.318 1.147 0.172 0.469 MesoH : -0.116 0.385 -0.212 0.279 MuHd_075 : 20.410 9.197 4.897 2.904 MuHd_095 : 20.745 13.691 6.342 3.364 MuHd_100 : 10.686 10.360 3.120 2.312 MuHd_105 : 9.446 9.830 3.427 2.279 Hmax_075 : -4.083 1.983 -4.024 0.362 Hmax_095 : -6.400 1.000 -4.160 0.400 Hmax_100 : -11.700 0.800 -5.230 0.400 Hmax_105 : -10.850 0.800 -4.720 0.400 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9634 0.0366 DFMC : 0.9425 0.0575
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 242 PY17X_1236500 MEILQLNSNSVEKKKTEENEAAIEHARPSKRWNPYIDNGGTVIGLTGKDYVILAGDTRLSLSYSIYTRNCPKISKITDKC 80 IIGSSGMQSDIKTLHSLLQKKIQLFYLEHSHYPSIHVIAKLLCVTLYSRRFFPYYTFNILAGIDEDGKGVLYSYDAIGSY 160 YMSTHACTGSGSSLILPILDNRVEQKNQLIKNIDFNLRDDINFVKDAMTSATERDIYTGDQAEIYIIDNLGINTTLLDLK 240 KD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PY17X_1236500 13 NSNSVEK|KK 0.068 . PY17X_1236500 14 SNSVEKK|KT 0.233 . PY17X_1236500 15 NSVEKKK|TE 0.106 . PY17X_1236500 27 AAIEHAR|PS 0.092 . PY17X_1236500 30 EHARPSK|RW 0.139 . PY17X_1236500 31 HARPSKR|WN 0.220 . PY17X_1236500 48 VIGLTGK|DY 0.062 . PY17X_1236500 58 ILAGDTR|LS 0.066 . PY17X_1236500 68 SYSIYTR|NC 0.086 . PY17X_1236500 72 YTRNCPK|IS 0.061 . PY17X_1236500 75 NCPKISK|IT 0.065 . PY17X_1236500 79 ISKITDK|CI 0.081 . PY17X_1236500 92 GMQSDIK|TL 0.064 . PY17X_1236500 100 LHSLLQK|KI 0.061 . PY17X_1236500 101 HSLLQKK|IQ 0.090 . PY17X_1236500 120 SIHVIAK|LL 0.076 . PY17X_1236500 129 CVTLYSR|RF 0.062 . PY17X_1236500 130 VTLYSRR|FF 0.106 . PY17X_1236500 148 GIDEDGK|GV 0.065 . PY17X_1236500 182 LPILDNR|VE 0.071 . PY17X_1236500 186 DNRVEQK|NQ 0.063 . PY17X_1236500 191 QKNQLIK|NI 0.076 . PY17X_1236500 198 NIDFNLR|DD 0.084 . PY17X_1236500 205 DDINFVK|DA 0.081 . PY17X_1236500 214 MTSATER|DI 0.176 . PY17X_1236500 240 TTLLDLK|KD 0.058 . PY17X_1236500 241 TLLDLKK|D- 0.114 . ____________________________^_________________

  • Fasta :-

    >PY17X_1236500 ATGGAAATTTTACAATTAAATAGTAATTCTGTTGAAAAAAAAAAAACAGAAGAAAATGAA GCCGCAATAGAGCATGCTCGACCTTCTAAACGATGGAATCCATACATTGACAATGGGGGA ACTGTCATTGGCTTAACAGGAAAAGATTATGTAATTTTGGCTGGCGATACACGTTTGTCA TTGTCTTATTCAATATACACAAGAAATTGTCCCAAAATATCAAAAATAACTGATAAATGC ATTATTGGATCGTCTGGAATGCAATCCGACATAAAAACGCTCCATTCACTATTACAGAAA AAAATTCAGTTATTTTATTTAGAACATTCACATTATCCTAGTATTCATGTGATTGCAAAA TTATTGTGTGTAACATTATATAGCCGAAGATTTTTTCCTTACTATACATTTAATATATTA GCTGGTATAGATGAAGATGGTAAAGGTGTGTTATATAGTTATGATGCAATCGGTTCATAT TATATGTCGACACATGCATGTACAGGAAGTGGATCATCTCTTATATTACCAATATTAGAT AATAGAGTTGAACAAAAAAATCAATTAATTAAAAATATTGATTTTAACTTAAGAGATGAT ATTAATTTTGTTAAAGATGCTATGACGTCTGCAACTGAAAGAGATATATATACAGGTGAC CAAGCAGAAATATATATTATTGATAATTTGGGAATAAATACTACATTATTAGACTTAAAA AAGGATTAA
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  • Fasta :-

    MEILQLNSNSVEKKKTEENEAAIEHARPSKRWNPYIDNGGTVIGLTGKDYVILAGDTRLS LSYSIYTRNCPKISKITDKCIIGSSGMQSDIKTLHSLLQKKIQLFYLEHSHYPSIHVIAK LLCVTLYSRRFFPYYTFNILAGIDEDGKGVLYSYDAIGSYYMSTHACTGSGSSLILPILD NRVEQKNQLIKNIDFNLRDDINFVKDAMTSATERDIYTGDQAEIYIIDNLGINTTLLDLK KD

  • title: active site
  • coordinates: G40,D56,R58,K72,S170,D215,T218,G219
No Results
No Results
IDSitePeptideScoreMethod
PY17X_123650029 SHARPSKRWN0.996unsp
PY17X_1236500


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India