PY17X_1338800 | proteasome subunit beta type-2, putative

_IDPredictionOTHERSPmTPCS_Position
PY17X_1338800OTHER0.9995120.0004420.000046
No Results

  • Fasta :-

    >PY17X_1338800 MDTLIGLKGKDFIILGADTYSINSIIKLKNDDKTKFYDINGNKCLLLGGSIGDRIQFGEF IRKNVHLYQYQNSTSLYVKSFAYFTRKNLAYYLRRNPYEVNCLIAGYDDKDGYQLYWCDY LSNMDAINKGAHGYGAYLVNAILDKYYHEDMNLEEALVIFKKCFEELKKRFLLTQINYEL RIMSNNKIETQYVNI
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PY17X_1338800.fa Sequence name : PY17X_1338800 Sequence length : 195 VALUES OF COMPUTED PARAMETERS Coef20 : 3.380 CoefTot : 0.000 ChDiff : 2 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.371 1.165 -0.061 0.481 MesoH : -1.356 -0.129 -0.569 0.109 MuHd_075 : 7.790 7.878 2.728 1.488 MuHd_095 : 23.094 10.386 5.126 3.865 MuHd_100 : 13.832 5.060 3.444 2.420 MuHd_105 : 12.870 3.613 3.852 0.944 Hmax_075 : 5.367 15.633 1.625 5.693 Hmax_095 : 8.137 12.500 0.690 4.655 Hmax_100 : 8.000 12.500 0.546 4.700 Hmax_105 : 4.000 11.667 0.546 4.540 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9816 0.0184 DFMC : 0.9875 0.0125
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 195 PY17X_1338800 MDTLIGLKGKDFIILGADTYSINSIIKLKNDDKTKFYDINGNKCLLLGGSIGDRIQFGEFIRKNVHLYQYQNSTSLYVKS 80 FAYFTRKNLAYYLRRNPYEVNCLIAGYDDKDGYQLYWCDYLSNMDAINKGAHGYGAYLVNAILDKYYHEDMNLEEALVIF 160 KKCFEELKKRFLLTQINYELRIMSNNKIETQYVNI 240 ................................................................................ 80 ................................................................................ 160 ................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PY17X_1338800 8 DTLIGLK|GK 0.056 . PY17X_1338800 10 LIGLKGK|DF 0.079 . PY17X_1338800 27 SINSIIK|LK 0.062 . PY17X_1338800 29 NSIIKLK|ND 0.062 . PY17X_1338800 33 KLKNDDK|TK 0.060 . PY17X_1338800 35 KNDDKTK|FY 0.078 . PY17X_1338800 43 YDINGNK|CL 0.058 . PY17X_1338800 54 GGSIGDR|IQ 0.084 . PY17X_1338800 62 QFGEFIR|KN 0.072 . PY17X_1338800 63 FGEFIRK|NV 0.099 . PY17X_1338800 79 STSLYVK|SF 0.076 . PY17X_1338800 86 SFAYFTR|KN 0.091 . PY17X_1338800 87 FAYFTRK|NL 0.078 . PY17X_1338800 94 NLAYYLR|RN 0.078 . PY17X_1338800 95 LAYYLRR|NP 0.107 . PY17X_1338800 110 IAGYDDK|DG 0.066 . PY17X_1338800 129 NMDAINK|GA 0.071 . PY17X_1338800 145 VNAILDK|YY 0.069 . PY17X_1338800 161 EALVIFK|KC 0.058 . PY17X_1338800 162 ALVIFKK|CF 0.104 . PY17X_1338800 168 KCFEELK|KR 0.054 . PY17X_1338800 169 CFEELKK|RF 0.065 . PY17X_1338800 170 FEELKKR|FL 0.233 . PY17X_1338800 181 QINYELR|IM 0.083 . PY17X_1338800 187 RIMSNNK|IE 0.062 . ____________________________^_________________

  • Fasta :-

    >PY17X_1338800 ATGGATACATTAATCGGTTTAAAGGGAAAAGATTTCATAATTTTAGGAGCAGATACTTAT AGCATTAATTCAATTATAAAATTAAAAAATGACGATAAAACAAAATTTTATGATATAAAT GGAAATAAATGCTTATTATTAGGAGGCTCAATTGGTGATAGAATACAATTTGGAGAGTTT ATTAGAAAGAATGTTCACTTATATCAATATCAAAATTCTACTTCTTTATATGTTAAATCT TTTGCTTATTTCACAAGAAAAAATCTAGCCTATTATTTGAGGAGAAATCCATATGAAGTA AATTGTTTGATAGCCGGATATGATGATAAGGATGGGTATCAACTATACTGGTGTGATTAT TTAAGTAACATGGATGCTATAAATAAAGGGGCTCATGGATATGGAGCTTATTTAGTTAAT GCCATATTGGATAAATATTATCATGAAGACATGAATTTAGAAGAGGCATTAGTTATTTTT AAAAAATGTTTTGAAGAACTAAAAAAAAGATTTCTTCTTACCCAAATTAATTACGAATTA AGAATCATGTCAAATAATAAAATAGAAACACAATACGTTAACATTTAA
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  • Fasta :-

    MDTLIGLKGKDFIILGADTYSINSIIKLKNDDKTKFYDINGNKCLLLGGSIGDRIQFGEF IRKNVHLYQYQNSTSLYVKSFAYFTRKNLAYYLRRNPYEVNCLIAGYDDKDGYQLYWCDY LSNMDAINKGAHGYGAYLVNAILDKYYHEDMNLEEALVIFKKCFEELKKRFLLTQINYEL RIMSNNKIETQYVNI

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PY17X_1338800


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India