PY17X_1363800 | rhomboid protease ROM6, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PY17X_1363800OTHER0.6901640.0000390.309797
No Results

  • Fasta :-

    >PY17X_1363800 MFNYYNYFKYRFLHINTSKRFHAFTKVVGKIQENTIKKKEKNIKLKERVKLIIFSSFYFF ACDYLYHVYILKGNKKVEEGNAYTTKEKKALTDNTKKDENKYQNNEMMPNFIKWINIFSR PEQTNKYILQKDRPISSDQNNQRCDNNDDFICEQIKNNNVDDEDIYLIKINNIKKKKDEQ NYKRDEFTVIRNQIFGYNMGNAIGGNTGKEPTQERNFKEIIENNLYQKNLLSGNNLFLIA NGVIFLCWRLGDIARNKKFYNFMCRHFICSYENIKKKHYHTIFTATISHMTLPHFLFNMW AFHTITNTLLYPEIKEKKTNYYYFFNYKSNILEKKVTNKDIINVCLLSSVMSTIPYILLN RYTQLLGASGAIMGLVYILSVVKPNEIFVSVFPFPYLKLSALQLCHISILTNFIFLFYKK NNFSIAWSAHLFGLLGGAIYSYYQRKINNNYNYYPFIQLSIQNGYLDYTNTYLDLLDFIK TLKLQTISFFSLDYRNIQQINKQLYMIQYTKSQRRAKIHAMKINNLKQMEK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PY17X_1363800.fa Sequence name : PY17X_1363800 Sequence length : 531 VALUES OF COMPUTED PARAMETERS Coef20 : 3.964 CoefTot : -1.720 ChDiff : 33 ZoneTo : 32 KR : 6 DE : 0 CleavSite : 22 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.924 2.024 0.382 0.742 MesoH : 0.763 1.188 0.005 0.483 MuHd_075 : 35.641 16.714 8.779 6.648 MuHd_095 : 29.210 17.951 8.564 5.829 MuHd_100 : 33.967 17.051 9.543 6.125 MuHd_105 : 41.263 25.222 12.191 8.469 Hmax_075 : 16.800 11.900 1.674 3.929 Hmax_095 : 12.200 10.150 0.003 4.100 Hmax_100 : 12.500 13.300 0.566 4.400 Hmax_105 : 19.717 20.767 3.715 6.942 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0992 0.9008 DFMC : 0.1441 0.8559 This protein is probably imported in mitochondria. f(Ser) = 0.0313 f(Arg) = 0.0625 CMi = 0.19841 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 531 PY17X_1363800 MFNYYNYFKYRFLHINTSKRFHAFTKVVGKIQENTIKKKEKNIKLKERVKLIIFSSFYFFACDYLYHVYILKGNKKVEEG 80 NAYTTKEKKALTDNTKKDENKYQNNEMMPNFIKWINIFSRPEQTNKYILQKDRPISSDQNNQRCDNNDDFICEQIKNNNV 160 DDEDIYLIKINNIKKKKDEQNYKRDEFTVIRNQIFGYNMGNAIGGNTGKEPTQERNFKEIIENNLYQKNLLSGNNLFLIA 240 NGVIFLCWRLGDIARNKKFYNFMCRHFICSYENIKKKHYHTIFTATISHMTLPHFLFNMWAFHTITNTLLYPEIKEKKTN 320 YYYFFNYKSNILEKKVTNKDIINVCLLSSVMSTIPYILLNRYTQLLGASGAIMGLVYILSVVKPNEIFVSVFPFPYLKLS 400 ALQLCHISILTNFIFLFYKKNNFSIAWSAHLFGLLGGAIYSYYQRKINNNYNYYPFIQLSIQNGYLDYTNTYLDLLDFIK 480 TLKLQTISFFSLDYRNIQQINKQLYMIQYTKSQRRAKIHAMKINNLKQMEK 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PY17X_1363800 9 NYYNYFK|YR 0.065 . PY17X_1363800 11 YNYFKYR|FL 0.137 . PY17X_1363800 19 LHINTSK|RF 0.064 . PY17X_1363800 20 HINTSKR|FH 0.162 . PY17X_1363800 26 RFHAFTK|VV 0.125 . PY17X_1363800 30 FTKVVGK|IQ 0.064 . PY17X_1363800 37 IQENTIK|KK 0.069 . PY17X_1363800 38 QENTIKK|KE 0.080 . PY17X_1363800 39 ENTIKKK|EK 0.107 . PY17X_1363800 41 TIKKKEK|NI 0.089 . PY17X_1363800 44 KKEKNIK|LK 0.070 . PY17X_1363800 46 EKNIKLK|ER 0.066 . PY17X_1363800 48 NIKLKER|VK 0.098 . PY17X_1363800 50 KLKERVK|LI 0.060 . PY17X_1363800 72 YHVYILK|GN 0.068 . PY17X_1363800 75 YILKGNK|KV 0.070 . PY17X_1363800 76 ILKGNKK|VE 0.089 . PY17X_1363800 86 GNAYTTK|EK 0.070 . PY17X_1363800 88 AYTTKEK|KA 0.059 . PY17X_1363800 89 YTTKEKK|AL 0.097 . PY17X_1363800 96 ALTDNTK|KD 0.059 . PY17X_1363800 97 LTDNTKK|DE 0.110 . PY17X_1363800 101 TKKDENK|YQ 0.071 . PY17X_1363800 113 MMPNFIK|WI 0.062 . PY17X_1363800 120 WINIFSR|PE 0.090 . PY17X_1363800 126 RPEQTNK|YI 0.074 . PY17X_1363800 131 NKYILQK|DR 0.067 . PY17X_1363800 133 YILQKDR|PI 0.102 . PY17X_1363800 143 SDQNNQR|CD 0.087 . PY17X_1363800 156 FICEQIK|NN 0.059 . PY17X_1363800 169 EDIYLIK|IN 0.058 . PY17X_1363800 174 IKINNIK|KK 0.064 . PY17X_1363800 175 KINNIKK|KK 0.108 . PY17X_1363800 176 INNIKKK|KD 0.166 . PY17X_1363800 177 NNIKKKK|DE 0.122 . PY17X_1363800 183 KDEQNYK|RD 0.056 . PY17X_1363800 184 DEQNYKR|DE 0.235 . PY17X_1363800 191 DEFTVIR|NQ 0.079 . PY17X_1363800 209 IGGNTGK|EP 0.067 . PY17X_1363800 215 KEPTQER|NF 0.087 . PY17X_1363800 218 TQERNFK|EI 0.148 . PY17X_1363800 228 ENNLYQK|NL 0.064 . PY17X_1363800 249 VIFLCWR|LG 0.075 . PY17X_1363800 255 RLGDIAR|NK 0.087 . PY17X_1363800 257 GDIARNK|KF 0.060 . PY17X_1363800 258 DIARNKK|FY 0.261 . PY17X_1363800 265 FYNFMCR|HF 0.092 . PY17X_1363800 275 CSYENIK|KK 0.057 . PY17X_1363800 276 SYENIKK|KH 0.087 . PY17X_1363800 277 YENIKKK|HY 0.187 . PY17X_1363800 315 LLYPEIK|EK 0.061 . PY17X_1363800 317 YPEIKEK|KT 0.064 . PY17X_1363800 318 PEIKEKK|TN 0.090 . PY17X_1363800 328 YYFFNYK|SN 0.069 . PY17X_1363800 334 KSNILEK|KV 0.081 . PY17X_1363800 335 SNILEKK|VT 0.102 . PY17X_1363800 339 EKKVTNK|DI 0.080 . PY17X_1363800 361 PYILLNR|YT 0.074 . PY17X_1363800 383 YILSVVK|PN 0.059 . PY17X_1363800 398 FPFPYLK|LS 0.058 . PY17X_1363800 419 FIFLFYK|KN 0.061 . PY17X_1363800 420 IFLFYKK|NN 0.082 . PY17X_1363800 445 IYSYYQR|KI 0.090 . PY17X_1363800 446 YSYYQRK|IN 0.083 . PY17X_1363800 480 DLLDFIK|TL 0.057 . PY17X_1363800 483 DFIKTLK|LQ 0.058 . PY17X_1363800 495 FFSLDYR|NI 0.118 . PY17X_1363800 502 NIQQINK|QL 0.066 . PY17X_1363800 511 YMIQYTK|SQ 0.070 . PY17X_1363800 514 QYTKSQR|RA 0.079 . PY17X_1363800 515 YTKSQRR|AK 0.149 . PY17X_1363800 517 KSQRRAK|IH 0.171 . PY17X_1363800 522 AKIHAMK|IN 0.071 . PY17X_1363800 527 MKINNLK|QM 0.072 . PY17X_1363800 531 NLKQMEK|-- 0.065 . ____________________________^_________________

  • Fasta :-

    >PY17X_1363800 ATGTTTAATTATTATAATTATTTTAAATATCGTTTTTTACATATAAATACAAGCAAACGT TTTCATGCTTTTACCAAAGTGGTAGGAAAAATACAAGAAAATACAATTAAAAAAAAGGAG AAAAATATAAAGCTAAAAGAAAGAGTAAAGCTTATTATTTTTAGTTCATTTTATTTTTTT GCTTGTGATTATTTATATCATGTGTATATATTAAAGGGTAACAAAAAGGTGGAAGAGGGT AATGCATATACAACAAAAGAAAAAAAAGCGTTAACAGATAATACCAAGAAAGATGAAAAT AAATACCAGAATAATGAAATGATGCCCAATTTTATTAAATGGATAAATATATTTTCAAGA CCTGAACAAACGAACAAATATATTTTACAAAAGGATAGACCAATAAGCAGCGATCAAAAC AATCAAAGGTGTGATAATAATGATGATTTCATATGTGAGCAAATAAAGAATAACAATGTA GATGATGAAGATATATATTTAATAAAAATAAATAATATAAAAAAAAAAAAAGACGAACAA AATTATAAAAGGGATGAATTTACTGTCATTAGAAATCAAATATTTGGCTACAATATGGGG AATGCCATTGGTGGGAACACAGGCAAAGAACCAACACAAGAAAGAAATTTTAAAGAAATA ATTGAAAATAATTTATATCAAAAAAATTTATTAAGTGGAAACAACCTTTTTTTGATTGCT AATGGAGTTATATTTTTATGCTGGAGATTGGGTGATATTGCTCGAAATAAAAAATTTTAC AATTTTATGTGTAGACATTTTATTTGTTCATATGAAAATATTAAAAAAAAACATTATCAT ACCATTTTTACAGCTACTATTAGTCATATGACATTGCCACATTTTTTATTCAATATGTGG GCATTCCATACAATTACTAATACATTATTATATCCAGAAATTAAAGAAAAAAAAACAAAT TACTATTATTTTTTTAATTACAAATCTAATATTTTAGAAAAAAAAGTTACAAATAAAGAT ATAATTAATGTTTGCCTTTTATCTTCTGTAATGTCAACTATTCCATATATTTTACTTAAC AGATATACTCAACTTTTAGGTGCATCTGGAGCTATAATGGGACTTGTATATATTTTATCA GTAGTTAAACCCAATGAAATATTTGTTTCTGTATTCCCGTTTCCTTATTTAAAACTATCA GCCCTACAATTATGTCATATATCTATTTTAACAAATTTCATTTTTTTATTTTACAAAAAA AATAATTTTAGTATTGCATGGTCAGCACATTTATTTGGTTTACTGGGTGGTGCAATATAC AGCTATTATCAAAGAAAAATAAATAACAACTATAATTATTATCCCTTTATTCAATTATCT ATTCAAAATGGTTACCTTGATTACACAAATACATATCTAGATTTATTAGATTTCATAAAA ACCTTAAAGCTTCAAACTATATCTTTTTTTTCATTAGATTACCGAAATATACAACAAATA AACAAACAATTATACATGATCCAATATACAAAATCACAAAGACGCGCAAAAATCCATGCA ATGAAAATTAATAATTTGAAACAAATGGAAAAGTGA
  • Download Fasta

  • Fasta :-

    MFNYYNYFKYRFLHINTSKRFHAFTKVVGKIQENTIKKKEKNIKLKERVKLIIFSSFYFF ACDYLYHVYILKGNKKVEEGNAYTTKEKKALTDNTKKDENKYQNNEMMPNFIKWINIFSR PEQTNKYILQKDRPISSDQNNQRCDNNDDFICEQIKNNNVDDEDIYLIKINNIKKKKDEQ NYKRDEFTVIRNQIFGYNMGNAIGGNTGKEPTQERNFKEIIENNLYQKNLLSGNNLFLIA NGVIFLCWRLGDIARNKKFYNFMCRHFICSYENIKKKHYHTIFTATISHMTLPHFLFNMW AFHTITNTLLYPEIKEKKTNYYYFFNYKSNILEKKVTNKDIINVCLLSSVMSTIPYILLN RYTQLLGASGAIMGLVYILSVVKPNEIFVSVFPFPYLKLSALQLCHISILTNFIFLFYKK NNFSIAWSAHLFGLLGGAIYSYYQRKINNNYNYYPFIQLSIQNGYLDYTNTYLDLLDFIK TLKLQTISFFSLDYRNIQQINKQLYMIQYTKSQRRAKIHAMKINNLKQMEK

    No Results
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PY17X_1363800


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India