PY17X_1447600 | ATP-dependent protease subunit ClpQ, putative

_IDPredictionOTHERSPmTPCS_Position
PY17X_1447600mTP0.3889900.0002090.610801CS pos: 24-25. RSY-FS. Pr: 0.4606
No Results

  • Fasta :-

    >PY17X_1447600 MFFKSLSNIIKPRKQITTAIQRSYFSDNGKIVIPRHGTTILCVRKNNEVCLIGDGMVSQG TMIVKGNAKKIRRLKDNILMGFAGATADCFTLLDKFETKIDEYPNQLLRSCVELAKLWRT DRYLRHLEAVLIVADKDTLLEVTGNGDVLEPSGNVLGTGSGGPYAMAAARALYDIENLSA KDIAYKAMNIAADMCCHTNHNFICETL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PY17X_1447600.fa Sequence name : PY17X_1447600 Sequence length : 207 VALUES OF COMPUTED PARAMETERS Coef20 : 4.462 CoefTot : -1.678 ChDiff : 4 ZoneTo : 47 KR : 9 DE : 1 CleavSite : 37 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.147 1.300 0.135 0.534 MesoH : -0.724 0.254 -0.378 0.207 MuHd_075 : 41.064 21.672 12.526 8.906 MuHd_095 : 27.881 18.611 8.044 7.441 MuHd_100 : 29.689 26.687 10.679 8.350 MuHd_105 : 33.191 31.699 13.024 9.065 Hmax_075 : 14.583 11.550 5.012 4.538 Hmax_095 : 12.513 5.425 2.224 2.817 Hmax_100 : 6.500 16.600 1.675 4.150 Hmax_105 : 12.833 20.183 2.639 5.203 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0973 0.9027 DFMC : 0.0913 0.9087 This protein is probably imported in mitochondria. f(Ser) = 0.0851 f(Arg) = 0.0851 CMi = 0.44994 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 207 PY17X_1447600 MFFKSLSNIIKPRKQITTAIQRSYFSDNGKIVIPRHGTTILCVRKNNEVCLIGDGMVSQGTMIVKGNAKKIRRLKDNILM 80 GFAGATADCFTLLDKFETKIDEYPNQLLRSCVELAKLWRTDRYLRHLEAVLIVADKDTLLEVTGNGDVLEPSGNVLGTGS 160 GGPYAMAAARALYDIENLSAKDIAYKAMNIAADMCCHTNHNFICETL 240 ................................................................................ 80 ................................................................................ 160 ............................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PY17X_1447600 4 ---MFFK|SL 0.100 . PY17X_1447600 11 SLSNIIK|PR 0.077 . PY17X_1447600 13 SNIIKPR|KQ 0.101 . PY17X_1447600 14 NIIKPRK|QI 0.099 . PY17X_1447600 22 ITTAIQR|SY 0.087 . PY17X_1447600 30 YFSDNGK|IV 0.084 . PY17X_1447600 35 GKIVIPR|HG 0.114 . PY17X_1447600 44 TTILCVR|KN 0.077 . PY17X_1447600 45 TILCVRK|NN 0.087 . PY17X_1447600 65 QGTMIVK|GN 0.066 . PY17X_1447600 69 IVKGNAK|KI 0.065 . PY17X_1447600 70 VKGNAKK|IR 0.080 . PY17X_1447600 72 GNAKKIR|RL 0.152 . PY17X_1447600 73 NAKKIRR|LK 0.171 . PY17X_1447600 75 KKIRRLK|DN 0.167 . PY17X_1447600 95 CFTLLDK|FE 0.058 . PY17X_1447600 99 LDKFETK|ID 0.060 . PY17X_1447600 109 YPNQLLR|SC 0.099 . PY17X_1447600 116 SCVELAK|LW 0.062 . PY17X_1447600 119 ELAKLWR|TD 0.085 . PY17X_1447600 122 KLWRTDR|YL 0.320 . PY17X_1447600 125 RTDRYLR|HL 0.285 . PY17X_1447600 136 VLIVADK|DT 0.066 . PY17X_1447600 170 YAMAAAR|AL 0.142 . PY17X_1447600 181 IENLSAK|DI 0.088 . PY17X_1447600 186 AKDIAYK|AM 0.067 . ____________________________^_________________

  • Fasta :-

    >PY17X_1447600 ATGTTTTTTAAATCCCTTTCAAATATAATTAAACCACGAAAGCAAATAACCACAGCAATT CAAAGAAGCTACTTTTCCGATAATGGAAAAATTGTAATACCGCGGCATGGAACTACGATA TTATGCGTACGCAAAAACAATGAAGTGTGTTTAATCGGTGATGGAATGGTTTCCCAAGGA ACAATGATAGTTAAAGGAAACGCGAAAAAAATAAGAAGGCTAAAAGATAACATTTTAATG GGTTTCGCAGGTGCTACAGCAGATTGTTTTACCTTATTAGACAAATTCGAAACCAAAATT GATGAATATCCAAATCAACTTCTGAGAAGCTGTGTTGAATTAGCCAAATTATGGAGAACT GATAGATATTTACGACATTTGGAAGCAGTATTAATAGTGGCCGACAAGGACACTTTATTA GAGGTAACTGGAAATGGTGACGTTTTAGAACCATCTGGAAATGTTTTAGGCACAGGATCG GGAGGTCCATATGCAATGGCAGCCGCACGGGCTTTATACGATATCGAAAATTTATCTGCT AAGGACATTGCTTATAAAGCTATGAATATTGCAGCTGATATGTGCTGTCACACGAATCAT AACTTTATATGCGAAACATTGTAG
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  • Fasta :-

    MFFKSLSNIIKPRKQITTAIQRSYFSDNGKIVIPRHGTTILCVRKNNEVCLIGDGMVSQG TMIVKGNAKKIRRLKDNILMGFAGATADCFTLLDKFETKIDEYPNQLLRSCVELAKLWRT DRYLRHLEAVLIVADKDTLLEVTGNGDVLEPSGNVLGTGSGGPYAMAAARALYDIENLSA KDIAYKAMNIAADMCCHTNHNFICETL

    No Results
  • title: active site
  • coordinates: T38,D54,M56,K70,S160
No Results
No Results
IDSitePeptideScoreMethod
PY17X_1447600179 SIENLSAKDI0.996unsp
PY17X_1447600


Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India