PcyM_0012800 | lysophospholipase, putative

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  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
PcyM_0012800OTHER0.9996950.0002620.000043
No Results

  • Fasta :-

    >PcyM_0012800 MVENEVYNQDMRIVRSRERLDGRPTIRSFFNKDGLLLKTYGWLVKNAIGLIVLIHGLNSH ARFSFLRHNVHVLNNNRAILMDGNNYYIYKDSWVEHFNKNGYSVFGIDLQGHGESEGWEN LSLNVKEFDDLVYDVLEYIQKIQDDNIRYLNNGSTGNSRRNSNSRGGESSRNDHLANRIT APLPVYLIGQSMGGNVALRALQLVGKFRGLNQRLNIRGCVSLSGMIAVEALGLPSSYIYK SFFMPLSRFFSDFLPTLRLLCELPYKRFQYIRDIGRYDRMRYRRGITCRFAYELLKAMDN LDHDMRYMPRDIPVLFIHSAKDKLCFPGGVVSFYNRLNIGNKELHMLNYMEHMLTMEPGN GRVLNKIMNWLYNISRPQRSSA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0012800.fa Sequence name : PcyM_0012800 Sequence length : 382 VALUES OF COMPUTED PARAMETERS Coef20 : 4.174 CoefTot : 0.000 ChDiff : 14 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.241 1.541 0.242 0.646 MesoH : -0.098 0.581 -0.212 0.258 MuHd_075 : 19.597 12.336 5.728 2.573 MuHd_095 : 10.154 16.852 4.321 5.205 MuHd_100 : 11.745 14.827 5.218 4.451 MuHd_105 : 12.161 11.052 5.330 3.816 Hmax_075 : -11.113 0.962 -3.753 -0.712 Hmax_095 : -10.762 2.363 -4.003 1.593 Hmax_100 : -14.900 5.600 -4.360 0.560 Hmax_105 : -3.967 5.950 -2.289 2.135 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8754 0.1246 DFMC : 0.9416 0.0584
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 382 PcyM_0012800 MVENEVYNQDMRIVRSRERLDGRPTIRSFFNKDGLLLKTYGWLVKNAIGLIVLIHGLNSHARFSFLRHNVHVLNNNRAIL 80 MDGNNYYIYKDSWVEHFNKNGYSVFGIDLQGHGESEGWENLSLNVKEFDDLVYDVLEYIQKIQDDNIRYLNNGSTGNSRR 160 NSNSRGGESSRNDHLANRITAPLPVYLIGQSMGGNVALRALQLVGKFRGLNQRLNIRGCVSLSGMIAVEALGLPSSYIYK 240 SFFMPLSRFFSDFLPTLRLLCELPYKRFQYIRDIGRYDRMRYRRGITCRFAYELLKAMDNLDHDMRYMPRDIPVLFIHSA 320 KDKLCFPGGVVSFYNRLNIGNKELHMLNYMEHMLTMEPGNGRVLNKIMNWLYNISRPQRSSA 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...........................................P.................................... 320 .............................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PcyM_0012800 12 VYNQDMR|IV 0.102 . PcyM_0012800 15 QDMRIVR|SR 0.312 . PcyM_0012800 17 MRIVRSR|ER 0.140 . PcyM_0012800 19 IVRSRER|LD 0.075 . PcyM_0012800 23 RERLDGR|PT 0.103 . PcyM_0012800 27 DGRPTIR|SF 0.122 . PcyM_0012800 32 IRSFFNK|DG 0.080 . PcyM_0012800 38 KDGLLLK|TY 0.065 . PcyM_0012800 45 TYGWLVK|NA 0.069 . PcyM_0012800 62 GLNSHAR|FS 0.124 . PcyM_0012800 67 ARFSFLR|HN 0.107 . PcyM_0012800 77 HVLNNNR|AI 0.075 . PcyM_0012800 90 NNYYIYK|DS 0.077 . PcyM_0012800 99 WVEHFNK|NG 0.061 . PcyM_0012800 126 NLSLNVK|EF 0.067 . PcyM_0012800 141 VLEYIQK|IQ 0.062 . PcyM_0012800 148 IQDDNIR|YL 0.092 . PcyM_0012800 159 GSTGNSR|RN 0.091 . PcyM_0012800 160 STGNSRR|NS 0.143 . PcyM_0012800 165 RRNSNSR|GG 0.141 . PcyM_0012800 171 RGGESSR|ND 0.084 . PcyM_0012800 178 NDHLANR|IT 0.082 . PcyM_0012800 199 GGNVALR|AL 0.097 . PcyM_0012800 206 ALQLVGK|FR 0.069 . PcyM_0012800 208 QLVGKFR|GL 0.124 . PcyM_0012800 213 FRGLNQR|LN 0.091 . PcyM_0012800 217 NQRLNIR|GC 0.076 . PcyM_0012800 240 PSSYIYK|SF 0.090 . PcyM_0012800 248 FFMPLSR|FF 0.139 . PcyM_0012800 258 DFLPTLR|LL 0.063 . PcyM_0012800 266 LCELPYK|RF 0.060 . PcyM_0012800 267 CELPYKR|FQ 0.105 . PcyM_0012800 272 KRFQYIR|DI 0.207 . PcyM_0012800 276 YIRDIGR|YD 0.079 . PcyM_0012800 279 DIGRYDR|MR 0.159 . PcyM_0012800 281 GRYDRMR|YR 0.115 . PcyM_0012800 283 YDRMRYR|RG 0.085 . PcyM_0012800 284 DRMRYRR|GI 0.629 *ProP* PcyM_0012800 289 RRGITCR|FA 0.194 . PcyM_0012800 296 FAYELLK|AM 0.061 . PcyM_0012800 306 NLDHDMR|YM 0.084 . PcyM_0012800 310 DMRYMPR|DI 0.112 . PcyM_0012800 321 LFIHSAK|DK 0.071 . PcyM_0012800 323 IHSAKDK|LC 0.086 . PcyM_0012800 336 VVSFYNR|LN 0.082 . PcyM_0012800 342 RLNIGNK|EL 0.067 . PcyM_0012800 362 MEPGNGR|VL 0.092 . PcyM_0012800 366 NGRVLNK|IM 0.065 . PcyM_0012800 376 WLYNISR|PQ 0.075 . PcyM_0012800 379 NISRPQR|SS 0.499 . ____________________________^_________________

  • Fasta :-

    >PcyM_0012800 ATGGTCGAAAATGAGGTATATAACCAGGATATGAGAATAGTCCGTAGCAGGGAACGGCTA GATGGAAGGCCAACGATTCGTTCATTTTTTAATAAGGATGGTTTGCTATTAAAAACATAT GGTTGGTTAGTAAAAAATGCGATAGGCCTTATAGTATTAATTCATGGATTAAATTCACAC GCAAGGTTTTCATTTTTGAGACATAACGTCCATGTATTAAATAATAATAGAGCAATATTA ATGGACGGAAATAATTATTACATTTATAAAGATAGCTGGGTAGAACATTTTAATAAAAAT GGATATTCTGTCTTCGGAATAGATTTACAAGGTCATGGCGAATCAGAAGGGTGGGAAAAT TTAAGTCTTAATGTAAAAGAATTTGATGATTTAGTATATGATGTGCTTGAATATATTCAA AAAATTCAAGACGACAACATACGATATTTAAATAATGGTAGTACCGGGAATAGTAGACGC AATAGTAACAGCAGAGGCGGTGAGTCGTCTCGTAATGATCATTTGGCCAATCGAATAACA GCACCTCTTCCAGTATATTTAATTGGTCAATCTATGGGCGGAAACGTTGCTCTAAGAGCA TTACAATTAGTCGGAAAATTTAGGGGCCTTAATCAAAGACTAAATATAAGAGGTTGTGTA TCATTATCTGGTATGATTGCTGTAGAAGCATTAGGATTACCAAGCTCATATATATATAAA AGTTTCTTTATGCCCTTGTCAAGATTCTTTTCTGATTTCTTACCAACATTGAGGCTTTTA TGCGAACTACCGTATAAAAGGTTTCAATATATTCGTGACATAGGTCGATATGACAGAATG CGTTATAGAAGAGGTATAACATGCAGATTTGCATATGAACTTTTAAAAGCAATGGATAAT TTAGACCATGATATGAGATACATGCCCAGAGATATCCCCGTATTGTTTATTCATTCAGCG AAGGACAAATTGTGCTTTCCTGGAGGTGTTGTTTCATTTTATAATAGACTAAATATTGGT AATAAAGAACTGCACATGTTAAATTATATGGAGCATATGCTAACTATGGAACCAGGAAAT GGAAGGGTCTTAAATAAAATTATGAATTGGCTTTACAACATATCAAGGCCGCAAAGAAGC AGTGCTTAA
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  • Fasta :-

    MVENEVYNQDMRIVRSRERLDGRPTIRSFFNKDGLLLKTYGWLVKNAIGLIVLIHGLNSH ARFSFLRHNVHVLNNNRAILMDGNNYYIYKDSWVEHFNKNGYSVFGIDLQGHGESEGWEN LSLNVKEFDDLVYDVLEYIQKIQDDNIRYLNNGSTGNSRRNSNSRGGESSRNDHLANRIT APLPVYLIGQSMGGNVALRALQLVGKFRGLNQRLNIRGCVSLSGMIAVEALGLPSSYIYK SFFMPLSRFFSDFLPTLRLLCELPYKRFQYIRDIGRYDRMRYRRGITCRFAYELLKAMDN LDHDMRYMPRDIPVLFIHSAKDKLCFPGGVVSFYNRLNIGNKELHMLNYMEHMLTMEPGN GRVLNKIMNWLYNISRPQRSSA

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_001280016 SRIVRSRERL0.992unspPcyM_0012800162 SSRRNSNSRG0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India