PcyM_0114000 | proteasome subunit alpha type-6, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_0114000OTHER0.9994190.0003000.000281
No Results

  • Fasta :-

    >PcyM_0114000 MVRQSQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSIGVKGENCAVIISQKKMATQY ISQDKLLDYNNITNIYNITDEIGCSMVGMPGDCLSMVYKARIEAAEFLYSNGHNVNVETL CRNICDKIQVFTQHAYMRLHACSGMIIGMGEDNKPGLFKFDPSGFCAGYRACVIGNKEQE SISILERLLEKRKKKIQQETLEEDVQNTIILAIEALQTILAFDLKANEIEMAIVSKANPN FTQISEKEIDNYLTFIAERD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0114000.fa Sequence name : PcyM_0114000 Sequence length : 260 VALUES OF COMPUTED PARAMETERS Coef20 : 3.774 CoefTot : -0.108 ChDiff : -6 ZoneTo : 9 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.141 1.735 0.245 0.616 MesoH : -0.676 0.217 -0.354 0.159 MuHd_075 : 3.995 3.733 1.471 0.924 MuHd_095 : 33.034 14.749 5.718 7.001 MuHd_100 : 31.622 17.345 5.763 7.429 MuHd_105 : 25.289 15.162 4.748 6.403 Hmax_075 : 2.800 0.600 -2.081 1.423 Hmax_095 : 9.450 5.775 -0.465 3.098 Hmax_100 : 10.500 7.400 -0.667 3.720 Hmax_105 : 9.700 8.100 -0.439 4.020 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9405 0.0595 DFMC : 0.9700 0.0300
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 260 PcyM_0114000 MVRQSQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSIGVKGENCAVIISQKKMATQYISQDKLLDYNNITNIYNITD 80 EIGCSMVGMPGDCLSMVYKARIEAAEFLYSNGHNVNVETLCRNICDKIQVFTQHAYMRLHACSGMIIGMGEDNKPGLFKF 160 DPSGFCAGYRACVIGNKEQESISILERLLEKRKKKIQQETLEEDVQNTIILAIEALQTILAFDLKANEIEMAIVSKANPN 240 FTQISEKEIDNYLTFIAERD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0114000 3 ----MVR|QS 0.084 . PcyM_0114000 11 SQSMYDR|HL 0.107 . PcyM_0114000 30 QIEYAIK|AV 0.070 . PcyM_0114000 33 YAIKAVK|NT 0.059 . PcyM_0114000 43 ITSIGVK|GE 0.065 . PcyM_0114000 54 AVIISQK|KM 0.059 . PcyM_0114000 55 VIISQKK|MA 0.131 . PcyM_0114000 65 QYISQDK|LL 0.063 . PcyM_0114000 99 CLSMVYK|AR 0.075 . PcyM_0114000 101 SMVYKAR|IE 0.105 . PcyM_0114000 122 NVETLCR|NI 0.094 . PcyM_0114000 127 CRNICDK|IQ 0.066 . PcyM_0114000 138 TQHAYMR|LH 0.106 . PcyM_0114000 154 GMGEDNK|PG 0.058 . PcyM_0114000 159 NKPGLFK|FD 0.069 . PcyM_0114000 170 GFCAGYR|AC 0.088 . PcyM_0114000 177 ACVIGNK|EQ 0.056 . PcyM_0114000 187 SISILER|LL 0.096 . PcyM_0114000 191 LERLLEK|RK 0.060 . PcyM_0114000 192 ERLLEKR|KK 0.188 . PcyM_0114000 193 RLLEKRK|KK 0.093 . PcyM_0114000 194 LLEKRKK|KI 0.122 . PcyM_0114000 195 LEKRKKK|IQ 0.283 . PcyM_0114000 225 ILAFDLK|AN 0.070 . PcyM_0114000 236 EMAIVSK|AN 0.063 . PcyM_0114000 247 FTQISEK|EI 0.077 . PcyM_0114000 259 LTFIAER|D- 0.096 . ____________________________^_________________

  • Fasta :-

    >PcyM_0114000 ATGGTGAGACAGTCGCAGAGCATGTACGATAGGCACCTGACTATCTTCTCCCCCGATGGA AACCTCTACCAGATAGAATACGCCATCAAGGCAGTGAAGAACACCAACATAACTTCCATC GGAGTGAAAGGAGAAAACTGTGCCGTAATCATTTCCCAAAAAAAAATGGCAACGCAGTAC ATCTCGCAAGACAAGCTACTAGATTACAACAACATCACGAATATTTACAACATAACCGAC GAAATCGGATGCTCCATGGTAGGAATGCCGGGGGATTGCCTCAGTATGGTGTATAAGGCT AGGATAGAGGCTGCCGAGTTCTTGTATTCCAATGGGCACAACGTTAACGTGGAAACCTTG TGCAGGAATATTTGCGACAAGATTCAGGTCTTCACGCAGCACGCCTACATGAGGCTGCAC GCTTGCAGCGGAATGATCATAGGCATGGGCGAGGACAACAAACCGGGCCTCTTCAAGTTC GACCCGTCGGGATTCTGCGCAGGGTACCGCGCGTGTGTGATTGGGAACAAGGAACAAGAA AGCATAAGCATACTGGAGAGGCTGCTGGAGAAGAGGAAGAAAAAAATACAACAAGAGACG TTAGAGGAGGATGTACAAAACACCATCATCTTGGCTATTGAAGCACTGCAGACCATTTTG GCTTTTGACTTAAAGGCCAACGAAATAGAAATGGCGATCGTTTCGAAGGCGAACCCCAAC TTTACGCAAATCAGCGAGAAGGAGATCGACAACTATTTGACCTTCATCGCGGAGCGGGAT TAG
  • Download Fasta

  • Fasta :-

    MVRQSQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSIGVKGENCAVIISQKKMATQY ISQDKLLDYNNITNIYNITDEIGCSMVGMPGDCLSMVYKARIEAAEFLYSNGHNVNVETL CRNICDKIQVFTQHAYMRLHACSGMIIGMGEDNKPGLFKFDPSGFCAGYRACVIGNKEQE SISILERLLEKRKKKIQQETLEEDVQNTIILAIEALQTILAFDLKANEIEMAIVSKANPN FTQISEKEIDNYLTFIAERD

  • title: active site
  • coordinates: I37,Q53,K55,N74,N176
No Results
No Results
No Results

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India