PcyM_0118600 | proteasome subunit beta type-4, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_0118600OTHER0.9905560.0029540.006491
No Results

  • Fasta :-

    >PcyM_0118600 MTLGPVVTGTSVIALKYKHGILIAADKKASYGSYAKFQNVERIFKINNKTVMSFSGELAD AQYLHEVLTRVNVNNVMDKKSKHDLHNTKYYHAYVGRLFYNRKNKIDPLFNTIIVAGLNS QEYDDNDKDVLLYSEKHTTDEYKVINKEDLYIGFVDMHGTQFSADYMTTGYARYFALTLL RDRYKDYMTEEEAKTLLNECLRVLYYRDATASNKIQVVKVTSKGVEYEEPYFLSCDMNSR DYVYPSIMLPSTGCMW
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0118600.fa Sequence name : PcyM_0118600 Sequence length : 256 VALUES OF COMPUTED PARAMETERS Coef20 : 3.602 CoefTot : -2.266 ChDiff : 0 ZoneTo : 56 KR : 8 DE : 2 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.059 1.053 0.053 0.451 MesoH : -1.029 0.029 -0.546 0.113 MuHd_075 : 32.563 15.761 8.639 6.344 MuHd_095 : 34.334 21.451 9.472 7.909 MuHd_100 : 39.557 25.697 11.196 9.643 MuHd_105 : 41.099 25.246 11.452 9.784 Hmax_075 : 5.100 5.300 -0.561 3.140 Hmax_095 : 5.863 9.363 -0.724 3.728 Hmax_100 : 14.600 17.800 1.706 6.420 Hmax_105 : 13.825 14.963 1.420 5.574 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8019 0.1981 DFMC : 0.7082 0.2918
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 256 PcyM_0118600 MTLGPVVTGTSVIALKYKHGILIAADKKASYGSYAKFQNVERIFKINNKTVMSFSGELADAQYLHEVLTRVNVNNVMDKK 80 SKHDLHNTKYYHAYVGRLFYNRKNKIDPLFNTIIVAGLNSQEYDDNDKDVLLYSEKHTTDEYKVINKEDLYIGFVDMHGT 160 QFSADYMTTGYARYFALTLLRDRYKDYMTEEEAKTLLNECLRVLYYRDATASNKIQVVKVTSKGVEYEEPYFLSCDMNSR 240 DYVYPSIMLPSTGCMW 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0118600 16 TSVIALK|YK 0.078 . PcyM_0118600 18 VIALKYK|HG 0.065 . PcyM_0118600 27 ILIAADK|KA 0.069 . PcyM_0118600 28 LIAADKK|AS 0.098 . PcyM_0118600 36 SYGSYAK|FQ 0.063 . PcyM_0118600 42 KFQNVER|IF 0.087 . PcyM_0118600 45 NVERIFK|IN 0.110 . PcyM_0118600 49 IFKINNK|TV 0.065 . PcyM_0118600 70 LHEVLTR|VN 0.076 . PcyM_0118600 79 VNNVMDK|KS 0.071 . PcyM_0118600 80 NNVMDKK|SK 0.171 . PcyM_0118600 82 VMDKKSK|HD 0.062 . PcyM_0118600 89 HDLHNTK|YY 0.074 . PcyM_0118600 97 YHAYVGR|LF 0.081 . PcyM_0118600 102 GRLFYNR|KN 0.072 . PcyM_0118600 103 RLFYNRK|NK 0.083 . PcyM_0118600 105 FYNRKNK|ID 0.106 . PcyM_0118600 128 EYDDNDK|DV 0.059 . PcyM_0118600 136 VLLYSEK|HT 0.066 . PcyM_0118600 143 HTTDEYK|VI 0.066 . PcyM_0118600 147 EYKVINK|ED 0.055 . PcyM_0118600 173 MTTGYAR|YF 0.075 . PcyM_0118600 181 FALTLLR|DR 0.082 . PcyM_0118600 183 LTLLRDR|YK 0.079 . PcyM_0118600 185 LLRDRYK|DY 0.095 . PcyM_0118600 194 MTEEEAK|TL 0.058 . PcyM_0118600 202 LLNECLR|VL 0.076 . PcyM_0118600 207 LRVLYYR|DA 0.178 . PcyM_0118600 214 DATASNK|IQ 0.057 . PcyM_0118600 219 NKIQVVK|VT 0.084 . PcyM_0118600 223 VVKVTSK|GV 0.099 . PcyM_0118600 240 SCDMNSR|DY 0.076 . ____________________________^_________________

  • Fasta :-

    >PcyM_0118600 ATGACGCTGGGTCCGGTGGTTACCGGCACGTCGGTCATTGCCCTCAAGTACAAGCATGGC ATTCTGATCGCGGCTGACAAGAAGGCGAGTTACGGGAGCTACGCCAAGTTCCAGAACGTG GAACGTATTTTCAAAATTAACAACAAAACTGTGATGAGCTTCAGCGGAGAGTTAGCGGAT GCACAGTACCTACACGAGGTACTCACCCGAGTTAACGTAAATAATGTGATGGATAAGAAA AGCAAGCATGACCTACACAATACCAAATACTATCATGCGTATGTTGGTAGGCTCTTTTAC AATCGGAAGAATAAAATCGACCCACTTTTCAATACAATTATCGTTGCGGGGTTGAATTCG CAAGAGTATGATGACAACGATAAGGATGTGTTACTCTACTCGGAGAAACACACAACTGAT GAGTATAAGGTAATTAATAAGGAAGACCTATATATCGGTTTCGTGGACATGCATGGGACT CAGTTCTCGGCAGATTATATGACGACTGGGTATGCTCGTTACTTCGCTTTGACTCTGCTT CGAGATCGGTATAAGGATTACATGACGGAGGAGGAAGCGAAGACTCTGTTGAATGAGTGC CTGCGTGTGCTTTACTACAGGGACGCCACGGCGTCGAATAAAATTCAGGTTGTTAAGGTC ACCAGCAAGGGGGTAGAGTACGAGGAGCCGTACTTCCTCTCGTGCGACATGAACTCGCGC GATTATGTCTACCCCTCGATTATGCTTCCCTCCACGGGCTGCATGTGGTAG
  • Download Fasta

  • Fasta :-

    MTLGPVVTGTSVIALKYKHGILIAADKKASYGSYAKFQNVERIFKINNKTVMSFSGELAD AQYLHEVLTRVNVNNVMDKKSKHDLHNTKYYHAYVGRLFYNRKNKIDPLFNTIIVAGLNS QEYDDNDKDVLLYSEKHTTDEYKVINKEDLYIGFVDMHGTQFSADYMTTGYARYFALTLL RDRYKDYMTEEEAKTLLNECLRVLYYRDATASNKIQVVKVTSKGVEYEEPYFLSCDMNSR DYVYPSIMLPSTGCMW

  • title: active site
  • coordinates: T10,D26,K28,R42,Y171,D208,A211,S212
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India