PcyM_0209100 | proteasome subunit beta type-3, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_0209100OTHER0.9263080.0632940.010398
No Results

  • Fasta :-

    >PcyM_0209100 MGSIFNYNGGCVLGMSGAQCVAIACDLRLGANNFTTISTNFTKIFKMNDYVYVGLSGLAT DIQTLYELLRYRVNLYEIRQESPMDIDCFANMLSSILYANRFSPYFVNPIVVGFRVKHTI DDEGKKISTFEPYLTAYDLIGAKCETNDFVVNGVTGEQLYGMCESLYIKDQDKDGLFETI SQCLLSALDRDCLSGWGAEVYVLTPDTIMKKKLKARMD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0209100.fa Sequence name : PcyM_0209100 Sequence length : 218 VALUES OF COMPUTED PARAMETERS Coef20 : 3.397 CoefTot : -1.679 ChDiff : -6 ZoneTo : 48 KR : 3 DE : 1 CleavSite : 30 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.518 1.571 0.476 0.527 MesoH : -0.270 0.396 -0.242 0.235 MuHd_075 : 26.471 11.500 7.656 5.788 MuHd_095 : 36.818 22.800 9.659 9.361 MuHd_100 : 34.018 23.984 9.920 9.244 MuHd_105 : 35.854 27.157 11.063 9.266 Hmax_075 : 10.412 8.983 5.460 4.188 Hmax_095 : 17.000 15.137 2.210 6.300 Hmax_100 : 18.900 17.200 3.264 6.700 Hmax_105 : 19.500 18.400 3.371 6.840 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8145 0.1855 DFMC : 0.8323 0.1677
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 218 PcyM_0209100 MGSIFNYNGGCVLGMSGAQCVAIACDLRLGANNFTTISTNFTKIFKMNDYVYVGLSGLATDIQTLYELLRYRVNLYEIRQ 80 ESPMDIDCFANMLSSILYANRFSPYFVNPIVVGFRVKHTIDDEGKKISTFEPYLTAYDLIGAKCETNDFVVNGVTGEQLY 160 GMCESLYIKDQDKDGLFETISQCLLSALDRDCLSGWGAEVYVLTPDTIMKKKLKARMD 240 ................................................................................ 80 ................................................................................ 160 .......................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0209100 28 AIACDLR|LG 0.072 . PcyM_0209100 43 ISTNFTK|IF 0.060 . PcyM_0209100 46 NFTKIFK|MN 0.062 . PcyM_0209100 70 TLYELLR|YR 0.073 . PcyM_0209100 72 YELLRYR|VN 0.072 . PcyM_0209100 79 VNLYEIR|QE 0.077 . PcyM_0209100 101 SILYANR|FS 0.074 . PcyM_0209100 115 PIVVGFR|VK 0.083 . PcyM_0209100 117 VVGFRVK|HT 0.070 . PcyM_0209100 125 TIDDEGK|KI 0.077 . PcyM_0209100 126 IDDEGKK|IS 0.074 . PcyM_0209100 143 YDLIGAK|CE 0.053 . PcyM_0209100 169 CESLYIK|DQ 0.071 . PcyM_0209100 173 YIKDQDK|DG 0.061 . PcyM_0209100 190 LLSALDR|DC 0.119 . PcyM_0209100 210 TPDTIMK|KK 0.067 . PcyM_0209100 211 PDTIMKK|KL 0.081 . PcyM_0209100 212 DTIMKKK|LK 0.086 . PcyM_0209100 214 IMKKKLK|AR 0.071 . PcyM_0209100 216 KKKLKAR|MD 0.128 . ____________________________^_________________

  • Fasta :-

    >PcyM_0209100 ATGGGCTCCATCTTCAACTACAACGGGGGGTGCGTCCTCGGAATGAGCGGCGCGCAGTGC GTAGCCATCGCGTGCGACCTGAGACTCGGTGCAAATAATTTCACCACGATCAGCACCAAT TTCACGAAGATATTTAAAATGAACGATTACGTTTATGTGGGACTTAGCGGACTCGCAACA GATATTCAGACATTGTATGAGTTGCTAAGGTACCGAGTGAACCTGTACGAAATTAGACAA GAGAGTCCAATGGATATAGATTGCTTCGCAAATATGTTATCGAGCATTTTGTATGCTAAT CGATTCTCTCCCTATTTCGTGAACCCGATTGTGGTTGGCTTTCGAGTTAAACACACTATT GATGATGAGGGGAAAAAAATTTCTACTTTTGAACCCTACCTCACTGCGTACGACTTGATT GGCGCCAAGTGCGAGACGAATGATTTTGTTGTGAACGGGGTCACCGGAGAGCAACTCTAC GGAATGTGCGAGTCGCTCTACATAAAGGACCAGGACAAAGACGGCCTCTTCGAAACCATC TCCCAGTGCCTGCTGAGTGCCTTGGACAGAGACTGCCTATCCGGATGGGGAGCCGAAGTT TACGTTCTGACGCCCGATACGATCATGAAGAAGAAACTGAAAGCACGAATGGACTGA
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  • Fasta :-

    MGSIFNYNGGCVLGMSGAQCVAIACDLRLGANNFTTISTNFTKIFKMNDYVYVGLSGLAT DIQTLYELLRYRVNLYEIRQESPMDIDCFANMLSSILYANRFSPYFVNPIVVGFRVKHTI DDEGKKISTFEPYLTAYDLIGAKCETNDFVVNGVTGEQLYGMCESLYIKDQDKDGLFETI SQCLLSALDRDCLSGWGAEVYVLTPDTIMKKKLKARMD

  • title: active site
  • coordinates: G10,D26,R28,K43,V154,D191,S194,G195
No Results
No Results
IDSitePeptideScoreMethod
PcyM_020910082 SIRQESPMDI0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India