PcyM_0216600 | proteasome subunit alpha type-5, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_0216600OTHER0.9992940.0001450.000561
No Results

  • Fasta :-

    >PcyM_0216600 MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAVGICVNDGVILASERRIASALIE KHSVEKLLPIDDHIGCAMSGLMADARTLIDYARVECNHYKFIYNENINIKSCVELISELA LDFSNLSDNKRKKIMSRPFGVALLIGGVDKNGPCLWYTEPSGTNTRFLAASIGSAQEGAE LLLQENYNKDMTFEEAEILALTVLRQVMEDKLSSSNVEIAAVKKSDQTFYKYNTEDISRI IEALPSPIYPTIDMTA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0216600.fa Sequence name : PcyM_0216600 Sequence length : 256 VALUES OF COMPUTED PARAMETERS Coef20 : 3.827 CoefTot : 0.359 ChDiff : -9 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.124 1.506 0.243 0.551 MesoH : -0.693 0.532 -0.327 0.225 MuHd_075 : 26.581 14.114 5.973 6.050 MuHd_095 : 22.151 12.185 5.897 4.710 MuHd_100 : 16.896 13.422 4.329 4.470 MuHd_105 : 11.946 13.520 3.115 4.358 Hmax_075 : 3.063 1.575 -1.476 2.135 Hmax_095 : 11.800 5.700 0.856 3.450 Hmax_100 : 3.000 3.000 -1.467 2.890 Hmax_105 : -5.775 2.400 -3.727 1.000 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7922 0.2078 DFMC : 0.8154 0.1846
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 256 PcyM_0216600 MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAVGICVNDGVILASERRIASALIEKHSVEKLLPIDDHIGCAMSG 80 LMADARTLIDYARVECNHYKFIYNENINIKSCVELISELALDFSNLSDNKRKKIMSRPFGVALLIGGVDKNGPCLWYTEP 160 SGTNTRFLAASIGSAQEGAELLLQENYNKDMTFEEAEILALTVLRQVMEDKLSSSNVEIAAVKKSDQTFYKYNTEDISRI 240 IEALPSPIYPTIDMTA 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0216600 5 --MFSTR|SE 0.129 . PcyM_0216600 10 TRSEYDR|GV 0.202 . PcyM_0216600 20 TFSPEGR|LF 0.104 . PcyM_0216600 32 YALGAIK|LG 0.060 . PcyM_0216600 52 VILASER|RI 0.074 . PcyM_0216600 53 ILASERR|IA 0.185 . PcyM_0216600 61 ASALIEK|HS 0.060 . PcyM_0216600 66 EKHSVEK|LL 0.062 . PcyM_0216600 86 GLMADAR|TL 0.113 . PcyM_0216600 93 TLIDYAR|VE 0.082 . PcyM_0216600 100 VECNHYK|FI 0.078 . PcyM_0216600 110 NENINIK|SC 0.076 . PcyM_0216600 130 SNLSDNK|RK 0.052 . PcyM_0216600 131 NLSDNKR|KK 0.200 . PcyM_0216600 132 LSDNKRK|KI 0.100 . PcyM_0216600 133 SDNKRKK|IM 0.141 . PcyM_0216600 137 RKKIMSR|PF 0.130 . PcyM_0216600 150 LIGGVDK|NG 0.057 . PcyM_0216600 166 PSGTNTR|FL 0.113 . PcyM_0216600 189 LQENYNK|DM 0.068 . PcyM_0216600 205 LALTVLR|QV 0.101 . PcyM_0216600 211 RQVMEDK|LS 0.065 . PcyM_0216600 223 VEIAAVK|KS 0.059 . PcyM_0216600 224 EIAAVKK|SD 0.133 . PcyM_0216600 231 SDQTFYK|YN 0.077 . PcyM_0216600 239 NTEDISR|II 0.085 . ____________________________^_________________

  • Fasta :-

    >PcyM_0216600 ATGTTCTCAACAAGGAGCGAGTACGACCGGGGAGTAAACACCTTTTCGCCAGAAGGCAGA CTTTTTCAAGTGGAGTACGCGCTGGGCGCTATAAAGCTGGGCAGCACGGCAGTCGGTATC TGCGTGAACGATGGAGTAATCTTGGCCTCGGAAAGAAGAATCGCCTCTGCATTAATAGAA AAACATTCAGTGGAGAAACTACTACCGATAGATGACCACATAGGATGTGCCATGAGTGGA CTCATGGCCGACGCAAGGACACTTATAGACTATGCAAGGGTTGAGTGTAACCATTACAAG TTCATATATAATGAAAATATAAACATAAAATCGTGTGTAGAATTAATATCGGAGTTAGCA TTAGATTTTTCCAACTTGTCTGACAATAAAAGGAAGAAAATTATGAGCAGACCATTTGGA GTTGCCTTACTCATAGGAGGGGTCGATAAGAATGGCCCTTGCCTTTGGTACACGGAACCG TCTGGAACGAACACCAGATTTTTAGCTGCTTCCATTGGGTCTGCTCAAGAAGGGGCCGAA TTATTGCTACAAGAAAATTACAATAAAGATATGACCTTTGAGGAAGCTGAAATTTTGGCG CTCACTGTTTTGAGGCAGGTCATGGAGGATAAGCTATCTTCCTCCAACGTGGAAATTGCT GCTGTTAAGAAATCCGACCAGACGTTTTACAAGTACAACACGGAGGACATCTCCAGGATC ATCGAGGCGCTGCCCTCGCCCATCTACCCGACGATCGACATGACGGCCTAG
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  • Fasta :-

    MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAVGICVNDGVILASERRIASALIE KHSVEKLLPIDDHIGCAMSGLMADARTLIDYARVECNHYKFIYNENINIKSCVELISELA LDFSNLSDNKRKKIMSRPFGVALLIGGVDKNGPCLWYTEPSGTNTRFLAASIGSAQEGAE LLLQENYNKDMTFEEAEILALTVLRQVMEDKLSSSNVEIAAVKKSDQTFYKYNTEDISRI IEALPSPIYPTIDMTA

  • title: active site
  • coordinates: S35,E51,R53,K66,S174
No Results
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India