PcyM_0311400 | tRNA N6-adenosine threonylcarbamoyltransferase, putative

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_IDPredictionOTHERSPmTPCS_Position
PcyM_0311400SP0.1838900.8112590.004851CS pos: 24-25. VHY-AY. Pr: 0.4322
No Results

  • Fasta :-

    >PcyM_0311400 MKNAIKNLAICLAFVLSLLRHVHYAYRIDNITIKKARFSDDLERTVQKINKRVQKDSVPS YDVCKYKKIPKFLTERNKLKDTQKVKYIVGIENTCDDTCICVLDSNLNIVKNVIISHFKV VHKYEGVYPFFVSSINQLFLKPYVEKTLEGIDESRISCFAFSACPGIAKSMEAAKNYIGE KKKQNGSIQVSPINHVFAHVLSPLFFHVYNDKNTYTNSGQYKEGKSEQSKNELGIDMHIS EEVRKDKTQMEKVKGILQILNSNDVTKRKMALLSEEEFLNCGNYVLRGEMGNETPQSGDS EELQSEESEALQNVESASPQSVESASLQRAESEAPQNVAYQRKNTSSAQKTQYSGDAPQG SHLTDGYICALVSGGSTQIYKVQRNKKNDINLCKLSQTVDISVGDIIDKIARLLGLPVGL GGGPFLERKSAEFVTRMKEERLSGEACADPFQPFPVPFSANSRIDFSFSGLYNHLRKIIE ESKKGESFEREKDRYAYYSQKNIFNHLLKQMNKIMYFSELHFNIKKLFIVGGVGCNHFLI TKLKSMAMKRSQLQVQLNEFKKLKKRLSKRVKKISEKKFLHFKVSKEVLKGEIEFTASLG WDIYLKLLLKRKTERDILSALKYFNFEDFSKLKEGGHFLLEGHSASSKSEAPWSVHKTPP NLSRDNAAMICFSAFLNLHNKSDLYEDVSQVKIKPTVKTQVENNFLLFSDMIIFDVFLQQ FGAQGG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0311400.fa Sequence name : PcyM_0311400 Sequence length : 726 VALUES OF COMPUTED PARAMETERS Coef20 : 4.849 CoefTot : 0.270 ChDiff : 23 ZoneTo : 28 KR : 4 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.129 1.835 0.156 0.598 MesoH : -0.603 0.443 -0.348 0.232 MuHd_075 : 27.962 21.632 8.154 7.318 MuHd_095 : 29.246 18.699 8.360 7.032 MuHd_100 : 32.859 24.726 9.541 7.607 MuHd_105 : 36.523 28.020 10.875 9.378 Hmax_075 : 19.717 25.200 4.643 7.957 Hmax_095 : 16.538 25.700 5.286 6.606 Hmax_100 : 14.900 28.100 6.088 6.050 Hmax_105 : 17.200 24.100 5.990 6.720 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1442 0.8558 DFMC : 0.3474 0.6526 This protein is probably imported in mitochondria. f(Ser) = 0.0357 f(Arg) = 0.0714 CMi = 0.21008 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 726 PcyM_0311400 MKNAIKNLAICLAFVLSLLRHVHYAYRIDNITIKKARFSDDLERTVQKINKRVQKDSVPSYDVCKYKKIPKFLTERNKLK 80 DTQKVKYIVGIENTCDDTCICVLDSNLNIVKNVIISHFKVVHKYEGVYPFFVSSINQLFLKPYVEKTLEGIDESRISCFA 160 FSACPGIAKSMEAAKNYIGEKKKQNGSIQVSPINHVFAHVLSPLFFHVYNDKNTYTNSGQYKEGKSEQSKNELGIDMHIS 240 EEVRKDKTQMEKVKGILQILNSNDVTKRKMALLSEEEFLNCGNYVLRGEMGNETPQSGDSEELQSEESEALQNVESASPQ 320 SVESASLQRAESEAPQNVAYQRKNTSSAQKTQYSGDAPQGSHLTDGYICALVSGGSTQIYKVQRNKKNDINLCKLSQTVD 400 ISVGDIIDKIARLLGLPVGLGGGPFLERKSAEFVTRMKEERLSGEACADPFQPFPVPFSANSRIDFSFSGLYNHLRKIIE 480 ESKKGESFEREKDRYAYYSQKNIFNHLLKQMNKIMYFSELHFNIKKLFIVGGVGCNHFLITKLKSMAMKRSQLQVQLNEF 560 KKLKKRLSKRVKKISEKKFLHFKVSKEVLKGEIEFTASLGWDIYLKLLLKRKTERDILSALKYFNFEDFSKLKEGGHFLL 640 EGHSASSKSEAPWSVHKTPPNLSRDNAAMICFSAFLNLHNKSDLYEDVSQVKIKPTVKTQVENNFLLFSDMIIFDVFLQQ 720 FGAQGG 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ............P................................................................... 640 ................................................................................ 720 ...... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PcyM_0311400 2 -----MK|NA 0.076 . PcyM_0311400 6 -MKNAIK|NL 0.061 . PcyM_0311400 20 FVLSLLR|HV 0.081 . PcyM_0311400 27 HVHYAYR|ID 0.081 . PcyM_0311400 34 IDNITIK|KA 0.071 . PcyM_0311400 35 DNITIKK|AR 0.072 . PcyM_0311400 37 ITIKKAR|FS 0.224 . PcyM_0311400 44 FSDDLER|TV 0.104 . PcyM_0311400 48 LERTVQK|IN 0.071 . PcyM_0311400 51 TVQKINK|RV 0.072 . PcyM_0311400 52 VQKINKR|VQ 0.154 . PcyM_0311400 55 INKRVQK|DS 0.242 . PcyM_0311400 65 PSYDVCK|YK 0.062 . PcyM_0311400 67 YDVCKYK|KI 0.074 . PcyM_0311400 68 DVCKYKK|IP 0.069 . PcyM_0311400 71 KYKKIPK|FL 0.067 . PcyM_0311400 76 PKFLTER|NK 0.066 . PcyM_0311400 78 FLTERNK|LK 0.060 . PcyM_0311400 80 TERNKLK|DT 0.096 . PcyM_0311400 84 KLKDTQK|VK 0.065 . PcyM_0311400 86 KDTQKVK|YI 0.087 . PcyM_0311400 111 SNLNIVK|NV 0.071 . PcyM_0311400 119 VIISHFK|VV 0.085 . PcyM_0311400 123 HFKVVHK|YE 0.077 . PcyM_0311400 141 INQLFLK|PY 0.062 . PcyM_0311400 146 LKPYVEK|TL 0.072 . PcyM_0311400 155 EGIDESR|IS 0.079 . PcyM_0311400 169 ACPGIAK|SM 0.086 . PcyM_0311400 175 KSMEAAK|NY 0.069 . PcyM_0311400 181 KNYIGEK|KK 0.060 . PcyM_0311400 182 NYIGEKK|KQ 0.094 . PcyM_0311400 183 YIGEKKK|QN 0.153 . PcyM_0311400 212 FHVYNDK|NT 0.063 . PcyM_0311400 222 TNSGQYK|EG 0.075 . PcyM_0311400 225 GQYKEGK|SE 0.080 . PcyM_0311400 230 GKSEQSK|NE 0.079 . PcyM_0311400 244 HISEEVR|KD 0.092 . PcyM_0311400 245 ISEEVRK|DK 0.134 . PcyM_0311400 247 EEVRKDK|TQ 0.155 . PcyM_0311400 252 DKTQMEK|VK 0.060 . PcyM_0311400 254 TQMEKVK|GI 0.103 . PcyM_0311400 267 NSNDVTK|RK 0.074 . PcyM_0311400 268 SNDVTKR|KM 0.109 . PcyM_0311400 269 NDVTKRK|MA 0.106 . PcyM_0311400 287 CGNYVLR|GE 0.101 . PcyM_0311400 329 ESASLQR|AE 0.097 . PcyM_0311400 342 QNVAYQR|KN 0.081 . PcyM_0311400 343 NVAYQRK|NT 0.129 . PcyM_0311400 350 NTSSAQK|TQ 0.066 . PcyM_0311400 381 GSTQIYK|VQ 0.058 . PcyM_0311400 384 QIYKVQR|NK 0.083 . PcyM_0311400 386 YKVQRNK|KN 0.066 . PcyM_0311400 387 KVQRNKK|ND 0.214 . PcyM_0311400 394 NDINLCK|LS 0.064 . PcyM_0311400 409 VGDIIDK|IA 0.058 . PcyM_0311400 412 IIDKIAR|LL 0.082 . PcyM_0311400 428 GGPFLER|KS 0.074 . PcyM_0311400 429 GPFLERK|SA 0.191 . PcyM_0311400 436 SAEFVTR|MK 0.138 . PcyM_0311400 438 EFVTRMK|EE 0.057 . PcyM_0311400 441 TRMKEER|LS 0.136 . PcyM_0311400 463 PFSANSR|ID 0.075 . PcyM_0311400 476 GLYNHLR|KI 0.091 . PcyM_0311400 477 LYNHLRK|II 0.115 . PcyM_0311400 483 KIIEESK|KG 0.060 . PcyM_0311400 484 IIEESKK|GE 0.098 . PcyM_0311400 490 KGESFER|EK 0.084 . PcyM_0311400 492 ESFEREK|DR 0.066 . PcyM_0311400 494 FEREKDR|YA 0.166 . PcyM_0311400 501 YAYYSQK|NI 0.067 . PcyM_0311400 509 IFNHLLK|QM 0.072 . PcyM_0311400 513 LLKQMNK|IM 0.065 . PcyM_0311400 525 ELHFNIK|KL 0.074 . PcyM_0311400 526 LHFNIKK|LF 0.092 . PcyM_0311400 542 NHFLITK|LK 0.060 . PcyM_0311400 544 FLITKLK|SM 0.086 . PcyM_0311400 549 LKSMAMK|RS 0.070 . PcyM_0311400 550 KSMAMKR|SQ 0.378 . PcyM_0311400 561 VQLNEFK|KL 0.058 . PcyM_0311400 562 QLNEFKK|LK 0.084 . PcyM_0311400 564 NEFKKLK|KR 0.057 . PcyM_0311400 565 EFKKLKK|RL 0.094 . PcyM_0311400 566 FKKLKKR|LS 0.161 . PcyM_0311400 569 LKKRLSK|RV 0.164 . PcyM_0311400 570 KKRLSKR|VK 0.268 . PcyM_0311400 572 RLSKRVK|KI 0.089 . PcyM_0311400 573 LSKRVKK|IS 0.528 *ProP* PcyM_0311400 577 VKKISEK|KF 0.058 . PcyM_0311400 578 KKISEKK|FL 0.120 . PcyM_0311400 583 KKFLHFK|VS 0.071 . PcyM_0311400 586 LHFKVSK|EV 0.092 . PcyM_0311400 590 VSKEVLK|GE 0.063 . PcyM_0311400 606 GWDIYLK|LL 0.053 . PcyM_0311400 610 YLKLLLK|RK 0.051 . PcyM_0311400 611 LKLLLKR|KT 0.148 . PcyM_0311400 612 KLLLKRK|TE 0.085 . PcyM_0311400 615 LKRKTER|DI 0.139 . PcyM_0311400 622 DILSALK|YF 0.058 . PcyM_0311400 631 NFEDFSK|LK 0.062 . PcyM_0311400 633 EDFSKLK|EG 0.067 . PcyM_0311400 648 GHSASSK|SE 0.081 . PcyM_0311400 657 APWSVHK|TP 0.056 . PcyM_0311400 664 TPPNLSR|DN 0.138 . PcyM_0311400 681 FLNLHNK|SD 0.073 . PcyM_0311400 692 EDVSQVK|IK 0.062 . PcyM_0311400 694 VSQVKIK|PT 0.081 . PcyM_0311400 698 KIKPTVK|TQ 0.054 . ____________________________^_________________

  • Fasta :-

    >PcyM_0311400 ATGAAAAATGCGATTAAAAACTTGGCCATATGTTTAGCCTTCGTCCTGAGTCTGCTTCGA CACGTACACTATGCATACAGGATTGACAACATAACAATTAAGAAAGCGCGATTTAGTGAC GACTTGGAAAGGACAGTACAAAAAATTAATAAGCGCGTCCAAAAGGACAGTGTCCCATCC TATGACGTGTGCAAGTATAAAAAAATCCCCAAATTTTTAACCGAAAGGAATAAGCTCAAA GATACCCAAAAAGTCAAGTACATCGTAGGGATTGAAAACACGTGTGATGATACTTGCATC TGTGTCCTTGACTCCAACTTGAATATTGTTAAAAATGTTATCATATCTCATTTTAAGGTG GTTCACAAGTATGAGGGCGTGTATCCCTTTTTTGTCAGCTCCATCAACCAGCTGTTTTTG AAGCCCTATGTGGAGAAGACTCTCGAGGGCATTGACGAAAGCCGAATCAGCTGCTTCGCC TTCAGCGCTTGCCCGGGAATAGCTAAAAGCATGGAGGCCGCCAAAAATTACATAGGGGAG AAGAAGAAGCAGAACGGAAGCATACAAGTAAGTCCGATCAATCACGTTTTTGCTCATGTC CTTTCGCCTCTCTTTTTCCACGTCTACAATGATAAAAATACATATACGAATAGTGGACAG TACAAGGAAGGAAAAAGCGAACAATCGAAAAATGAACTTGGTATCGACATGCACATCTCG GAGGAGGTCAGAAAGGATAAGACACAAATGGAAAAAGTGAAAGGCATTCTGCAGATTCTC AATAGTAACGATGTGACGAAGCGGAAGATGGCACTTTTGAGCGAAGAGGAATTTTTAAAC TGCGGCAATTATGTGCTTAGGGGGGAGATGGGCAACGAGACACCCCAAAGTGGGGACAGT GAGGAACTCCAAAGTGAGGAAAGTGAGGCACTCCAAAATGTGGAAAGTGCGTCACCCCAA AGTGTGGAAAGTGCGTCACTCCAACGTGCGGAAAGTGAGGCACCACAGAATGTAGCCTAC CAGAGGAAGAACACCTCCTCTGCGCAGAAAACGCAGTATAGTGGGGACGCACCCCAGGGA AGCCACTTGACAGATGGATACATCTGCGCGTTAGTTTCCGGAGGAAGCACTCAAATTTAC AAAGTTCAAAGGAACAAAAAAAACGACATTAATTTGTGCAAGTTGTCTCAGACGGTCGAT ATTTCCGTTGGAGACATAATTGACAAAATTGCTAGGCTGCTGGGGCTCCCCGTTGGGTTA GGGGGAGGTCCCTTCCTTGAAAGGAAGTCAGCAGAGTTCGTTACAAGAATGAAGGAGGAG AGGCTGAGTGGGGAGGCTTGCGCGGATCCATTTCAGCCCTTTCCCGTTCCCTTCTCCGCG AACAGCCGAATCGATTTTTCGTTCTCAGGCCTGTACAACCACCTGCGCAAAATCATCGAG GAATCAAAAAAAGGAGAGTCCTTCGAGCGGGAAAAAGACAGATATGCCTACTATAGTCAG AAAAATATTTTCAACCACCTCCTGAAGCAGATGAACAAAATTATGTATTTCTCAGAGTTG CATTTCAATATAAAAAAATTATTCATAGTGGGGGGAGTTGGATGCAACCACTTTTTAATC ACCAAGTTGAAAAGTATGGCTATGAAAAGAAGTCAATTACAAGTTCAGCTAAATGAATTT AAAAAATTAAAGAAAAGGCTAAGTAAGAGGGTAAAAAAAATAAGTGAGAAAAAATTTTTA CATTTTAAAGTGTCCAAGGAAGTACTCAAAGGGGAAATTGAGTTCACTGCATCCCTGGGT TGGGATATTTACTTAAAACTTCTTTTAAAGAGGAAAACGGAACGAGATATTTTGTCAGCT TTAAAGTATTTTAATTTTGAGGACTTTTCGAAACTGAAGGAGGGGGGTCATTTTCTGCTG GAGGGTCATTCTGCTTCCTCCAAAAGTGAAGCGCCCTGGAGCGTGCACAAGACGCCGCCC AACCTCAGCAGAGACAACGCGGCCATGATTTGCTTTAGCGCCTTTTTGAATTTGCACAAC AAAAGCGATCTCTATGAGGATGTATCTCAGGTTAAAATTAAACCAACGGTGAAGACCCAG GTTGAAAATAATTTCCTGCTCTTTTCCGACATGATCATTTTTGATGTGTTTCTGCAGCAG TTTGGCGCCCAGGGGGGGTGA
  • Download Fasta

  • Fasta :-

    MKNAIKNLAICLAFVLSLLRHVHYAYRIDNITIKKARFSDDLERTVQKINKRVQKDSVPS YDVCKYKKIPKFLTERNKLKDTQKVKYIVGIENTCDDTCICVLDSNLNIVKNVIISHFKV VHKYEGVYPFFVSSINQLFLKPYVEKTLEGIDESRISCFAFSACPGIAKSMEAAKNYIGE KKKQNGSIQVSPINHVFAHVLSPLFFHVYNDKNTYTNSGQYKEGKSEQSKNELGIDMHIS EEVRKDKTQMEKVKGILQILNSNDVTKRKMALLSEEEFLNCGNYVLRGEMGNETPQSGDS EELQSEESEALQNVESASPQSVESASLQRAESEAPQNVAYQRKNTSSAQKTQYSGDAPQG SHLTDGYICALVSGGSTQIYKVQRNKKNDINLCKLSQTVDISVGDIIDKIARLLGLPVGL GGGPFLERKSAEFVTRMKEERLSGEACADPFQPFPVPFSANSRIDFSFSGLYNHLRKIIE ESKKGESFEREKDRYAYYSQKNIFNHLLKQMNKIMYFSELHFNIKKLFIVGGVGCNHFLI TKLKSMAMKRSQLQVQLNEFKKLKKRLSKRVKKISEKKFLHFKVSKEVLKGEIEFTASLG WDIYLKLLLKRKTERDILSALKYFNFEDFSKLKEGGHFLLEGHSASSKSEAPWSVHKTPP NLSRDNAAMICFSAFLNLHNKSDLYEDVSQVKIKPTVKTQVENNFLLFSDMIIFDVFLQQ FGAQGG

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_0311400443 SEERLSGEAC0.995unspPcyM_0311400443 SEERLSGEAC0.995unspPcyM_0311400443 SEERLSGEAC0.995unspPcyM_0311400487 SKKGESFERE0.996unspPcyM_0311400568 SKKRLSKRVK0.995unspPcyM_0311400575 SVKKISEKKF0.993unspPcyM_0311400647 SHSASSKSEA0.997unspPcyM_0311400300 SQSGDSEELQ0.991unspPcyM_0311400321 SASPQSVESA0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India