PcyM_0318400 | conserved Plasmodium protein, unknown function

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_IDPredictionOTHERSPmTPCS_Position
PcyM_0318400mTP0.3645390.0003770.635084CS pos: 19-20. RCT-WG. Pr: 0.1647
No Results

  • Fasta :-

    >PcyM_0318400 MFHHLRGKNALHNHLSRCTWGKFPPGVIPYRNRGPKLRGITVLKTLRRPHSGYSKKGGDP SHTTRHITDCKGGKADPFKERHERDGGSERGDKLNSETSMYYPERNSFPYVTTGIVLGMV GISSFFQLLIYNLKNCDDESSILLRVNEILDHLDAYFIIHDFEEGPSERRSTCGDASVQP SLFNIKYLTSPFFVNENFLQCAVQLSTFFLASRFLEKQFGSLKFGSLFICGCILSNLLTH QFLKYLANQMEALNFFSFVLIHPSGCMAFICALCSICFKNCAIWKDIPVHCSILVVPYLF SSFYGLLSLYKIGKNSLDRTHGEVTQEGGSPNQRNSLQNVDVKDHPYEDPPQMGMPNTSS TLANDPIDPLHSNDKEQPNGLSSNKHLPSETMETLRNFLVVKACDGVIKRRKKENMFPNK KLQNLKNESLRNINEINNKSKKIFFGLSSSFTDICGILLASCAPFLFKMIR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0318400.fa Sequence name : PcyM_0318400 Sequence length : 471 VALUES OF COMPUTED PARAMETERS Coef20 : 3.872 CoefTot : -3.700 ChDiff : 13 ZoneTo : 58 KR : 13 DE : 0 CleavSite : 50 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.024 2.029 0.538 0.763 MesoH : 0.770 1.164 0.039 0.459 MuHd_075 : 37.913 23.741 9.478 8.262 MuHd_095 : 38.135 19.751 9.391 8.886 MuHd_100 : 31.043 17.501 7.740 8.097 MuHd_105 : 36.536 20.231 9.267 9.878 Hmax_075 : 10.500 12.367 -0.556 4.050 Hmax_095 : 6.212 7.900 -0.913 3.447 Hmax_100 : 6.100 6.100 -0.567 3.760 Hmax_105 : 9.683 9.917 1.505 4.853 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0048 0.9952 DFMC : 0.0181 0.9819 This protein is probably imported in mitochondria. f(Ser) = 0.0517 f(Arg) = 0.1207 CMi = 0.21645 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 471 PcyM_0318400 MFHHLRGKNALHNHLSRCTWGKFPPGVIPYRNRGPKLRGITVLKTLRRPHSGYSKKGGDPSHTTRHITDCKGGKADPFKE 80 RHERDGGSERGDKLNSETSMYYPERNSFPYVTTGIVLGMVGISSFFQLLIYNLKNCDDESSILLRVNEILDHLDAYFIIH 160 DFEEGPSERRSTCGDASVQPSLFNIKYLTSPFFVNENFLQCAVQLSTFFLASRFLEKQFGSLKFGSLFICGCILSNLLTH 240 QFLKYLANQMEALNFFSFVLIHPSGCMAFICALCSICFKNCAIWKDIPVHCSILVVPYLFSSFYGLLSLYKIGKNSLDRT 320 HGEVTQEGGSPNQRNSLQNVDVKDHPYEDPPQMGMPNTSSTLANDPIDPLHSNDKEQPNGLSSNKHLPSETMETLRNFLV 400 VKACDGVIKRRKKENMFPNKKLQNLKNESLRNINEINNKSKKIFFGLSSSFTDICGILLASCAPFLFKMIR 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ....................................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0318400 6 -MFHHLR|GK 0.096 . PcyM_0318400 8 FHHLRGK|NA 0.065 . PcyM_0318400 17 LHNHLSR|CT 0.122 . PcyM_0318400 22 SRCTWGK|FP 0.082 . PcyM_0318400 31 PGVIPYR|NR 0.110 . PcyM_0318400 33 VIPYRNR|GP 0.077 . PcyM_0318400 36 YRNRGPK|LR 0.146 . PcyM_0318400 38 NRGPKLR|GI 0.129 . PcyM_0318400 44 RGITVLK|TL 0.058 . PcyM_0318400 47 TVLKTLR|RP 0.069 . PcyM_0318400 48 VLKTLRR|PH 0.111 . PcyM_0318400 55 PHSGYSK|KG 0.069 . PcyM_0318400 56 HSGYSKK|GG 0.185 . PcyM_0318400 65 DPSHTTR|HI 0.153 . PcyM_0318400 71 RHITDCK|GG 0.061 . PcyM_0318400 74 TDCKGGK|AD 0.070 . PcyM_0318400 79 GKADPFK|ER 0.069 . PcyM_0318400 81 ADPFKER|HE 0.117 . PcyM_0318400 84 FKERHER|DG 0.424 . PcyM_0318400 90 RDGGSER|GD 0.080 . PcyM_0318400 93 GSERGDK|LN 0.106 . PcyM_0318400 105 SMYYPER|NS 0.116 . PcyM_0318400 134 LLIYNLK|NC 0.059 . PcyM_0318400 145 ESSILLR|VN 0.093 . PcyM_0318400 169 EEGPSER|RS 0.084 . PcyM_0318400 170 EGPSERR|ST 0.145 . PcyM_0318400 186 PSLFNIK|YL 0.060 . PcyM_0318400 213 TFFLASR|FL 0.126 . PcyM_0318400 217 ASRFLEK|QF 0.073 . PcyM_0318400 223 KQFGSLK|FG 0.061 . PcyM_0318400 244 LTHQFLK|YL 0.075 . PcyM_0318400 279 LCSICFK|NC 0.061 . PcyM_0318400 285 KNCAIWK|DI 0.073 . PcyM_0318400 311 GLLSLYK|IG 0.057 . PcyM_0318400 314 SLYKIGK|NS 0.065 . PcyM_0318400 319 GKNSLDR|TH 0.110 . PcyM_0318400 334 GGSPNQR|NS 0.101 . PcyM_0318400 343 LQNVDVK|DH 0.069 . PcyM_0318400 375 PLHSNDK|EQ 0.063 . PcyM_0318400 385 NGLSSNK|HL 0.061 . PcyM_0318400 396 ETMETLR|NF 0.074 . PcyM_0318400 402 RNFLVVK|AC 0.071 . PcyM_0318400 409 ACDGVIK|RR 0.058 . PcyM_0318400 410 CDGVIKR|RK 0.129 . PcyM_0318400 411 DGVIKRR|KK 0.147 . PcyM_0318400 412 GVIKRRK|KE 0.070 . PcyM_0318400 413 VIKRRKK|EN 0.197 . PcyM_0318400 420 ENMFPNK|KL 0.064 . PcyM_0318400 421 NMFPNKK|LQ 0.070 . PcyM_0318400 426 KKLQNLK|NE 0.056 . PcyM_0318400 431 LKNESLR|NI 0.113 . PcyM_0318400 439 INEINNK|SK 0.072 . PcyM_0318400 441 EINNKSK|KI 0.091 . PcyM_0318400 442 INNKSKK|IF 0.127 . PcyM_0318400 468 CAPFLFK|MI 0.068 . PcyM_0318400 471 FLFKMIR|-- 0.096 . ____________________________^_________________

  • Fasta :-

    >PcyM_0318400 ATGTTTCACCATTTGAGGGGGAAAAATGCACTACATAACCACCTATCGAGGTGCACCTGG GGGAAGTTCCCGCCTGGGGTTATCCCCTACCGGAACCGCGGGCCCAAGCTAAGAGGTATA ACTGTGTTGAAGACTTTGAGAAGACCCCACAGTGGTTACAGTAAGAAGGGGGGCGACCCA TCGCACACCACAAGGCACATAACGGATTGCAAAGGTGGCAAAGCAGATCCGTTTAAAGAA AGGCATGAAAGGGACGGAGGGAGCGAACGCGGTGACAAGCTAAACTCAGAAACGTCCATG TACTACCCAGAGCGCAATTCCTTCCCATATGTGACGACCGGCATCGTGCTGGGCATGGTG GGCATTTCGTCCTTCTTCCAACTTTTAATTTACAACTTGAAAAATTGCGACGACGAATCG AGCATCCTGCTGAGGGTAAACGAAATCCTGGACCATCTGGATGCCTACTTTATAATTCAC GATTTTGAAGAGGGCCCAAGCGAAAGACGCAGTACATGCGGAGATGCCTCTGTACAGCCT AGCCTCTTCAACATAAAATATTTGACGTCTCCATTTTTCGTTAATGAAAATTTCCTACAG TGCGCAGTTCAGCTATCCACTTTTTTTTTGGCCTCCAGATTTCTCGAAAAACAATTTGGG TCCCTAAAGTTTGGATCCCTATTCATATGCGGCTGCATACTTTCCAATCTTCTAACACAT CAATTTTTAAAATACCTTGCGAACCAAATGGAAGCATTAAACTTCTTCAGCTTTGTTCTC ATACACCCTTCTGGGTGCATGGCTTTTATATGTGCCCTGTGTTCCATTTGCTTCAAAAAT TGTGCCATCTGGAAGGACATTCCTGTCCACTGCTCGATTTTAGTCGTTCCCTATTTATTT TCTTCCTTTTATGGCCTCTTATCTTTGTACAAAATTGGAAAAAACAGCTTGGACAGGACT CACGGGGAGGTCACTCAGGAAGGAGGCTCTCCCAATCAGCGGAACTCCCTTCAAAATGTA GACGTTAAAGACCATCCCTACGAAGATCCCCCACAGATGGGTATGCCAAACACGAGTAGC ACCCTTGCCAACGACCCAATTGACCCCCTACACAGCAATGACAAAGAACAACCAAATGGC CTTTCCAGTAATAAACACCTCCCAAGTGAAACCATGGAAACTCTAAGGAACTTCCTAGTC GTAAAAGCATGTGATGGAGTTATTAAGAGACGCAAAAAGGAAAATATGTTTCCAAACAAA AAGCTGCAGAACCTCAAAAATGAATCGCTAAGAAATATCAACGAAATTAATAACAAGTCG AAGAAAATATTTTTTGGTTTGTCTTCTTCCTTTACGGACATATGTGGCATCCTGCTCGCC TCATGCGCGCCTTTCCTTTTTAAAATGATCAGGTAG
  • Download Fasta

  • Fasta :-

    MFHHLRGKNALHNHLSRCTWGKFPPGVIPYRNRGPKLRGITVLKTLRRPHSGYSKKGGDP SHTTRHITDCKGGKADPFKERHERDGGSERGDKLNSETSMYYPERNSFPYVTTGIVLGMV GISSFFQLLIYNLKNCDDESSILLRVNEILDHLDAYFIIHDFEEGPSERRSTCGDASVQP SLFNIKYLTSPFFVNENFLQCAVQLSTFFLASRFLEKQFGSLKFGSLFICGCILSNLLTH QFLKYLANQMEALNFFSFVLIHPSGCMAFICALCSICFKNCAIWKDIPVHCSILVVPYLF SSFYGLLSLYKIGKNSLDRTHGEVTQEGGSPNQRNSLQNVDVKDHPYEDPPQMGMPNTSS TLANDPIDPLHSNDKEQPNGLSSNKHLPSETMETLRNFLVVKACDGVIKRRKKENMFPNK KLQNLKNESLRNINEINNKSKKIFFGLSSSFTDICGILLASCAPFLFKMIR

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_0318400167 SEEGPSERRS0.992unspPcyM_0318400167 SEEGPSERRS0.992unspPcyM_0318400167 SEEGPSERRS0.992unspPcyM_0318400171 SSERRSTCGD0.995unspPcyM_031840051 SRRPHSGYSK0.993unspPcyM_031840054 SHSGYSKKGG0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India