PcyM_0417500 | serine-repeat antigen (SERA)

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008234      

  • Computed_GO_Functions:  cysteine-type peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_0417500SP0.0850870.9137110.001203CS pos: 24-25. VKS-NI. Pr: 0.9830
No Results

  • Fasta :-

    >PcyM_0417500 MKINQIAQYVLLVLVAHLVKRVKSNIIVNCFGMLHCRICHTAIRNCFLSGTSNLTKCIQC EEKYYDIQPCTHHTENFLQTSRDKGAFVEMKDHDYLTEDRVDELISEVIKLSLEKQKNAV PATEHTNEEFHKKIMQLCLYSNFNDNYENAKKHTQANAEEVEKHIHKVVSMYMKESNNME HIINSLKNPALCLKSPEEWTKDRAGYKDNDDVPSVIIPERKLFKPYEVKSLKSSLYSYQS NCNRQFCDRFSDPNECENSIRVLNQGICGNCWAFASSQVISAFRCRKGLGFAEPSVKYVT LCKNKNADNFQENPFGHYNDNICSEGGHLSYYLETLDKTKMLPTSYDVPYNEPLKGAECP EANAQWDNMWDQVNPLTRIMNGYLYRGYFKISFHEYARSGRTDELISLIKDYIIDQGSLF VSMEVNEKLSFDHDGEKVMMNCEYRASPDHALALIGYGDYLKPSGERSSYWLLRNSWGSH WGDRGNFKIDMYGPSDCNGAVLCNAFPLLLQMNGNKITKPLPKDLASTDSRIRYDHSMFT RDQNRRQSRRYNSGEEQDRPNGQADNNPFDNSKNNDTYDGDDRNWQDFDPFREGYVYPYM DNRRDGARRNEEDRNNETDRSNEGMGDNRGSKIRRKVFKTSLVVNIGDTQFNRIIYMKRK DEYKEQHSCLRTYSLDSLADVSCRNNCNQYIDLCKHYTSIGMCLMRFANNYKCVYCGM
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0417500.fa Sequence name : PcyM_0417500 Sequence length : 718 VALUES OF COMPUTED PARAMETERS Coef20 : 4.161 CoefTot : -0.943 ChDiff : -4 ZoneTo : 60 KR : 7 DE : 0 CleavSite : 23 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.224 1.741 0.180 0.601 MesoH : -0.759 0.334 -0.350 0.128 MuHd_075 : 23.717 24.643 7.537 6.636 MuHd_095 : 35.069 26.757 11.821 9.653 MuHd_100 : 31.492 23.721 10.489 8.531 MuHd_105 : 24.174 18.360 9.280 5.716 Hmax_075 : 19.017 13.800 5.899 7.460 Hmax_095 : 17.500 21.000 6.152 6.134 Hmax_100 : 17.500 20.200 6.764 6.420 Hmax_105 : 12.483 11.317 7.502 6.680 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1974 0.8026 DFMC : 0.2441 0.7559 This protein is probably imported in mitochondria. f(Ser) = 0.0500 f(Arg) = 0.0500 CMi = 0.35714 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 718 PcyM_0417500 MKINQIAQYVLLVLVAHLVKRVKSNIIVNCFGMLHCRICHTAIRNCFLSGTSNLTKCIQCEEKYYDIQPCTHHTENFLQT 80 SRDKGAFVEMKDHDYLTEDRVDELISEVIKLSLEKQKNAVPATEHTNEEFHKKIMQLCLYSNFNDNYENAKKHTQANAEE 160 VEKHIHKVVSMYMKESNNMEHIINSLKNPALCLKSPEEWTKDRAGYKDNDDVPSVIIPERKLFKPYEVKSLKSSLYSYQS 240 NCNRQFCDRFSDPNECENSIRVLNQGICGNCWAFASSQVISAFRCRKGLGFAEPSVKYVTLCKNKNADNFQENPFGHYND 320 NICSEGGHLSYYLETLDKTKMLPTSYDVPYNEPLKGAECPEANAQWDNMWDQVNPLTRIMNGYLYRGYFKISFHEYARSG 400 RTDELISLIKDYIIDQGSLFVSMEVNEKLSFDHDGEKVMMNCEYRASPDHALALIGYGDYLKPSGERSSYWLLRNSWGSH 480 WGDRGNFKIDMYGPSDCNGAVLCNAFPLLLQMNGNKITKPLPKDLASTDSRIRYDHSMFTRDQNRRQSRRYNSGEEQDRP 560 NGQADNNPFDNSKNNDTYDGDDRNWQDFDPFREGYVYPYMDNRRDGARRNEEDRNNETDRSNEGMGDNRGSKIRRKVFKT 640 SLVVNIGDTQFNRIIYMKRKDEYKEQHSCLRTYSLDSLADVSCRNNCNQYIDLCKHYTSIGMCLMRFANNYKCVYCGM 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .............................................................................. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0417500 2 -----MK|IN 0.067 . PcyM_0417500 20 LVAHLVK|RV 0.063 . PcyM_0417500 21 VAHLVKR|VK 0.199 . PcyM_0417500 23 HLVKRVK|SN 0.082 . PcyM_0417500 37 FGMLHCR|IC 0.100 . PcyM_0417500 44 ICHTAIR|NC 0.090 . PcyM_0417500 56 GTSNLTK|CI 0.079 . PcyM_0417500 63 CIQCEEK|YY 0.078 . PcyM_0417500 82 NFLQTSR|DK 0.102 . PcyM_0417500 84 LQTSRDK|GA 0.074 . PcyM_0417500 91 GAFVEMK|DH 0.074 . PcyM_0417500 100 DYLTEDR|VD 0.063 . PcyM_0417500 110 LISEVIK|LS 0.066 . PcyM_0417500 115 IKLSLEK|QK 0.066 . PcyM_0417500 117 LSLEKQK|NA 0.077 . PcyM_0417500 132 TNEEFHK|KI 0.073 . PcyM_0417500 133 NEEFHKK|IM 0.098 . PcyM_0417500 151 DNYENAK|KH 0.067 . PcyM_0417500 152 NYENAKK|HT 0.096 . PcyM_0417500 163 NAEEVEK|HI 0.079 . PcyM_0417500 167 VEKHIHK|VV 0.079 . PcyM_0417500 174 VVSMYMK|ES 0.079 . PcyM_0417500 187 HIINSLK|NP 0.058 . PcyM_0417500 194 NPALCLK|SP 0.079 . PcyM_0417500 201 SPEEWTK|DR 0.071 . PcyM_0417500 203 EEWTKDR|AG 0.091 . PcyM_0417500 207 KDRAGYK|DN 0.091 . PcyM_0417500 220 SVIIPER|KL 0.084 . PcyM_0417500 221 VIIPERK|LF 0.079 . PcyM_0417500 224 PERKLFK|PY 0.065 . PcyM_0417500 229 FKPYEVK|SL 0.077 . PcyM_0417500 232 YEVKSLK|SS 0.069 . PcyM_0417500 244 YQSNCNR|QF 0.107 . PcyM_0417500 249 NRQFCDR|FS 0.153 . PcyM_0417500 261 ECENSIR|VL 0.106 . PcyM_0417500 284 QVISAFR|CR 0.076 . PcyM_0417500 286 ISAFRCR|KG 0.074 . PcyM_0417500 287 SAFRCRK|GL 0.413 . PcyM_0417500 297 FAEPSVK|YV 0.069 . PcyM_0417500 303 KYVTLCK|NK 0.059 . PcyM_0417500 305 VTLCKNK|NA 0.065 . PcyM_0417500 338 YLETLDK|TK 0.050 . PcyM_0417500 340 ETLDKTK|ML 0.064 . PcyM_0417500 355 PYNEPLK|GA 0.073 . PcyM_0417500 378 QVNPLTR|IM 0.097 . PcyM_0417500 386 MNGYLYR|GY 0.125 . PcyM_0417500 390 LYRGYFK|IS 0.063 . PcyM_0417500 398 SFHEYAR|SG 0.138 . PcyM_0417500 401 EYARSGR|TD 0.195 . PcyM_0417500 410 ELISLIK|DY 0.067 . PcyM_0417500 428 SMEVNEK|LS 0.060 . PcyM_0417500 437 FDHDGEK|VM 0.058 . PcyM_0417500 445 MMNCEYR|AS 0.098 . PcyM_0417500 462 GYGDYLK|PS 0.057 . PcyM_0417500 467 LKPSGER|SS 0.104 . PcyM_0417500 474 SSYWLLR|NS 0.105 . PcyM_0417500 484 GSHWGDR|GN 0.129 . PcyM_0417500 488 GDRGNFK|ID 0.069 . PcyM_0417500 516 LQMNGNK|IT 0.062 . PcyM_0417500 519 NGNKITK|PL 0.071 . PcyM_0417500 523 ITKPLPK|DL 0.068 . PcyM_0417500 531 LASTDSR|IR 0.091 . PcyM_0417500 533 STDSRIR|YD 0.081 . PcyM_0417500 541 DHSMFTR|DQ 0.116 . PcyM_0417500 545 FTRDQNR|RQ 0.082 . PcyM_0417500 546 TRDQNRR|QS 0.155 . PcyM_0417500 549 QNRRQSR|RY 0.363 . PcyM_0417500 550 NRRQSRR|YN 0.374 . PcyM_0417500 559 SGEEQDR|PN 0.112 . PcyM_0417500 573 NPFDNSK|NN 0.065 . PcyM_0417500 583 TYDGDDR|NW 0.077 . PcyM_0417500 592 QDFDPFR|EG 0.081 . PcyM_0417500 603 YPYMDNR|RD 0.093 . PcyM_0417500 604 PYMDNRR|DG 0.104 . PcyM_0417500 608 NRRDGAR|RN 0.108 . PcyM_0417500 609 RRDGARR|NE 0.140 . PcyM_0417500 614 RRNEEDR|NN 0.122 . PcyM_0417500 620 RNNETDR|SN 0.231 . PcyM_0417500 629 EGMGDNR|GS 0.081 . PcyM_0417500 632 GDNRGSK|IR 0.158 . PcyM_0417500 634 NRGSKIR|RK 0.089 . PcyM_0417500 635 RGSKIRR|KV 0.272 . PcyM_0417500 636 GSKIRRK|VF 0.090 . PcyM_0417500 639 IRRKVFK|TS 0.082 . PcyM_0417500 653 GDTQFNR|II 0.099 . PcyM_0417500 658 NRIIYMK|RK 0.071 . PcyM_0417500 659 RIIYMKR|KD 0.218 . PcyM_0417500 660 IIYMKRK|DE 0.139 . PcyM_0417500 664 KRKDEYK|EQ 0.077 . PcyM_0417500 671 EQHSCLR|TY 0.074 . PcyM_0417500 684 LADVSCR|NN 0.091 . PcyM_0417500 695 QYIDLCK|HY 0.068 . PcyM_0417500 706 IGMCLMR|FA 0.111 . PcyM_0417500 712 RFANNYK|CV 0.083 . ____________________________^_________________

  • Fasta :-

    >PcyM_0417500 ATGAAGATAAATCAGATTGCGCAGTACGTCCTGCTCGTCCTGGTTGCCCATTTGGTGAAG CGAGTCAAGTCTAACATTATAGTCAACTGCTTCGGTATGCTACACTGCAGAATATGTCAC ACAGCCATACGGAATTGCTTCTTATCAGGGACTAGTAACTTAACAAAGTGTATCCAATGC GAGGAGAAGTACTACGACATTCAGCCGTGCACTCACCATACAGAAAATTTCCTGCAGACC TCCAGGGACAAAGGAGCCTTTGTGGAGATGAAAGATCATGATTACCTAACGGAGGACAGA GTGGACGAACTCATTTCTGAGGTGATAAAGTTATCGTTGGAGAAGCAGAAAAATGCAGTG CCGGCAACAGAACACACAAATGAAGAATTCCATAAGAAAATAATGCAGCTCTGTTTGTAC TCTAACTTTAATGACAATTACGAAAATGCAAAGAAGCACACCCAGGCAAATGCTGAGGAG GTGGAAAAACACATTCACAAGGTCGTTAGCATGTACATGAAGGAGAGTAACAACATGGAA CATATTATTAACTCGCTGAAGAACCCAGCCTTGTGTTTGAAATCCCCAGAAGAGTGGACG AAGGACAGGGCCGGCTACAAGGACAACGATGATGTGCCTTCGGTCATCATACCCGAGCGG AAGCTGTTCAAGCCGTACGAGGTGAAGTCGCTGAAGAGCTCCCTTTACAGTTACCAGTCG AACTGCAACCGGCAGTTCTGCGACAGGTTTTCCGACCCCAACGAGTGCGAGAATAGCATC CGGGTCCTCAACCAGGGCATATGCGGAAACTGCTGGGCCTTCGCCTCCTCGCAAGTGATC TCCGCCTTCAGATGCAGGAAGGGTCTGGGATTCGCGGAACCCTCCGTGAAGTACGTCACG CTCTGCAAAAACAAAAACGCAGATAACTTCCAAGAAAACCCATTCGGTCACTACAACGAT AACATCTGTAGTGAAGGGGGACATCTCTCATACTACTTAGAGACGTTAGACAAAACGAAA ATGCTGCCTACCTCGTATGACGTCCCATACAACGAGCCATTAAAAGGAGCAGAATGCCCA GAAGCCAACGCCCAATGGGATAACATGTGGGATCAGGTGAACCCATTGACTAGAATTATG AATGGGTATCTCTACCGAGGGTATTTCAAAATTTCCTTTCATGAGTATGCAAGGAGTGGA AGGACTGATGAGCTTATTAGCTTAATTAAAGACTACATAATAGATCAGGGGTCCTTGTTC GTATCCATGGAGGTAAACGAAAAGCTAAGTTTTGATCATGATGGAGAGAAAGTCATGATG AACTGTGAATACAGAGCATCCCCTGATCATGCTTTGGCATTAATAGGGTATGGTGATTAT TTAAAACCATCAGGAGAAAGAAGTTCTTATTGGTTACTCAGAAACAGTTGGGGCTCTCAT TGGGGGGACAGAGGAAATTTCAAAATTGATATGTATGGTCCTTCCGACTGTAACGGTGCA GTATTATGTAATGCCTTCCCTCTACTGCTCCAAATGAATGGGAATAAAATTACGAAACCG CTTCCAAAAGATTTAGCATCTACGGATAGCAGGATAAGGTATGACCACTCCATGTTCACT AGGGACCAAAACAGGAGACAGTCCAGGAGATACAACTCGGGTGAAGAACAGGACAGACCA AATGGTCAGGCAGATAATAACCCATTTGATAACTCTAAAAATAATGATACATATGATGGC GATGATAGGAATTGGCAAGATTTTGATCCGTTTAGGGAGGGCTACGTTTACCCCTACATG GATAATAGAAGGGACGGGGCACGCCGCAACGAGGAGGACCGCAACAACGAGACGGACCGC AGCAACGAGGGCATGGGTGACAACCGCGGCAGCAAAATCCGCAGAAAAGTTTTCAAGACC TCCCTCGTGGTAAATATTGGGGATACGCAGTTCAACCGGATCATCTACATGAAAAGAAAA GACGAGTACAAGGAGCAGCACTCCTGCCTGCGGACCTACTCCCTGGATTCCCTAGCGGAC GTCTCCTGCAGGAACAACTGCAATCAGTATATTGACCTGTGCAAGCATTATACGTCCATT GGGATGTGTCTCATGCGCTTTGCTAACAACTATAAGTGTGTTTACTGTGGCATGTAA
  • Download Fasta

  • Fasta :-

    MKINQIAQYVLLVLVAHLVKRVKSNIIVNCFGMLHCRICHTAIRNCFLSGTSNLTKCIQC EEKYYDIQPCTHHTENFLQTSRDKGAFVEMKDHDYLTEDRVDELISEVIKLSLEKQKNAV PATEHTNEEFHKKIMQLCLYSNFNDNYENAKKHTQANAEEVEKHIHKVVSMYMKESNNME HIINSLKNPALCLKSPEEWTKDRAGYKDNDDVPSVIIPERKLFKPYEVKSLKSSLYSYQS NCNRQFCDRFSDPNECENSIRVLNQGICGNCWAFASSQVISAFRCRKGLGFAEPSVKYVT LCKNKNADNFQENPFGHYNDNICSEGGHLSYYLETLDKTKMLPTSYDVPYNEPLKGAECP EANAQWDNMWDQVNPLTRIMNGYLYRGYFKISFHEYARSGRTDELISLIKDYIIDQGSLF VSMEVNEKLSFDHDGEKVMMNCEYRASPDHALALIGYGDYLKPSGERSSYWLLRNSWGSH WGDRGNFKIDMYGPSDCNGAVLCNAFPLLLQMNGNKITKPLPKDLASTDSRIRYDHSMFT RDQNRRQSRRYNSGEEQDRPNGQADNNPFDNSKNNDTYDGDDRNWQDFDPFREGYVYPYM DNRRDGARRNEEDRNNETDRSNEGMGDNRGSKIRRKVFKTSLVVNIGDTQFNRIIYMKRK DEYKEQHSCLRTYSLDSLADVSCRNNCNQYIDLCKHYTSIGMCLMRFANNYKCVYCGM

    No Results
  • title: active site
  • coordinates: Q265,C271,H450,N475
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_0417500464 SYLKPSGERS0.994unspPcyM_0417500464 SYLKPSGERS0.994unspPcyM_0417500464 SYLKPSGERS0.994unspPcyM_0417500548 SNRRQSRRYN0.996unspPcyM_0417500553 SRRYNSGEEQ0.998unspPcyM_041750064 YCEEKYYDIQ0.99unspPcyM_0417500195 SLCLKSPEEW0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India